PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G152800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 242aa MW: 27570.3 Da PI: 9.2694

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G152800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.5	1.4e-17	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r tf kR++g++KK +ELS+LC++e++ i+++++ Aqcoe5G152800.1.p 11 IANDSARRATFKKRKKGLMKKVSELSTLCGVEACAIVYGPE 51 89*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.2E-23	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.016	1	49	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.04E-22	2	86	No hit	No description
PRINTS	PR00404	5.7E-8	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.27E-24	3	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-18	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MARKKVKLAW IANDSARRAT FKKRKKGLMK KVSELSTLCG VEACAIVYGP EDPQPDVWPS 60 SPSEAHRVLT RFKSMPEMEQ SKKMMNQEGL LRQGISKVKE QLKKQQKENR NFELTQLMYR 120 SLNGEALPDV GTDVLHALEG VIDEKMKAIQ ERIDVLRGTT SVPPQLINGT GAEMEMEAVQ 180 RQKWYEAMMH NPPQEQQQQQ QQQQQQQQQH QSAGYYGGGN EFANGVPYGD HAPWPNHHFY 240 H*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAWIANDSARRATFKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX680241	0.0	JX680241.1 Aquilegia coerulea MADS-box protein AGL84 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008800341.1	1e-72	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	1e-43	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	K7X0K4	1e-180	K7X0K4_AQUCA; MADS-box protein AGL84
STRING	Aquca_007_00647.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	7e-40	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Aqcoe5G152800.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]