PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G154700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 436aa    MW: 48544.4 Da    PI: 6.2054
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G154700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-1688177198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k+++ps+v+   +l lp kf+ +h   ++e++++tl de+ ++   k+    ++++  l++GWk+F  a++L egD++vF+l+++++f  
  Aqcoe5G154700.1.p  88 FVKIMLPSHVSGGFWLGLPTKFCISHL--PKEDVMMTLIDENQEELLAKF--LPRKNG--LSGGWKGFSIAHKLVEGDVLVFHLIKDTKF-- 171
                        89**********************995..33789****************..555544..9************************98888.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                         v ++r
  Aqcoe5G154700.1.p 172 QVYIIR 177
                        888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-2581178IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-2082178IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-2686177No hitNo description
PROSITE profilePS5086310.88488179IPR003340B3 DNA binding domain
PfamPF023621.7E-1488178IPR003340B3 DNA binding domain
SMARTSM010193.1E-2088179IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGVKEKRKKT AYEENHLALA HFSHGSNDYN PTSSPKPISM VAFHQDKSGT SLSYKQIQTL  60
LDHDKAKQCA KERAEEVQAN LDPGFPSFVK IMLPSHVSGG FWLGLPTKFC ISHLPKEDVM  120
MTLIDENQEE LLAKFLPRKN GLSGGWKGFS IAHKLVEGDV LVFHLIKDTK FQVYIIRAYG  180
LGGIDGVVGL LSLDSHPKCT SQSEHVMITE NTSTEHQKTG LMADLPPSEE EETESNSEEV  240
GSEVLEGIRF LENTVEFKDV KNIESFTIAV NGLIIDSEFP KEARTKYYKL CRSHGAFLHD  300
NLLEGMNINL VVGAIFETVH IADSIQACKV STSGDNFIAW DKSLAALEQL GMNVGFLRAR  360
LQRLKSIAFQ SEADSKRYAE AQVGRAHIEK EIILVNGKLA ELEKASKMLD LEIKTLEPKT  420
KSDEMRFQSM VGFPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269230.11e-122PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A2G5EL010.0A0A2G5EL01_AQUCA; Uncharacterized protein
STRINGAquca_007_00624.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-47B3 family protein