PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G154800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 404aa    MW: 45223.8 Da    PI: 7.2394
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G154800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.7e-1863152198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k++ ps+v+   +l lp kf+++h  + +e+++ltl de+ ++++ k+    ++ +  l++GW++F  a++L egD +vF+l+++++f  
  Aqcoe5G154800.1.p  63 FVKIMQPSHVSDGFWLGLPAKFCSSHL-P-KEDVMLTLVDENQEEFSAKY--LTSKTG--LSGGWRGFSLAHRLVEGDALVFHLIKDTKF-- 146
                        89***********************95.3.3789****************..555544..9************************98888.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                         v ++r
  Aqcoe5G154800.1.p 147 QVYIVR 152
                        777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-2456152IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-2156152IPR015300DNA-binding pseudobarrel domain
CDDcd100179.92E-2661152No hitNo description
SMARTSM010191.5E-1963157IPR003340B3 DNA binding domain
PROSITE profilePS5086312.23863154IPR003340B3 DNA binding domain
PfamPF023625.2E-1663152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
SFPSRRGSDV FKVCKHTFLK IVFGFIRSFE RKQTLPEHDK AKRCAKERAE EVQANLDPEF  60
RSFVKIMQPS HVSDGFWLGL PAKFCSSHLP KEDVMLTLVD ENQEEFSAKY LTSKTGLSGG  120
WRGFSLAHRL VEGDALVFHL IKDTKFQVYI VRAFSLGALD GIVGLLTLDS RRRRKHTTQS  180
KPIMTTEETA KKRQKTAMMS GLPPSEEKSG SNSDEVDSDV LEGIRFLENT VEFKDVKTIE  240
SFTIAVNGLI IDSEIPKDVW TKYYKLCCSC GAFLHDNLLE GINVKLAAGA ISETVHFANA  300
IRASKVSTSG DDFIAWDKSL AALEQLGMNV CFLRARLQQL KSIAFESEEV SKRYAEAQEI  360
IIVNGKLAEL EKASKMLDSE IETLETKTKG DEMRFQTVVG SPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172194RRKHTTQSKPIMTTEETAKKRQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019055393.11e-122PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A2G5EKY70.0A0A2G5EKY7_AQUCA; Uncharacterized protein
STRINGAquca_007_00623.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-46B3 family protein