PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G163600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ZF-HD
Protein Properties Length: 181aa    MW: 20370.1 Da    PI: 8.4025
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G163600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.17.7e-321570258
        ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                       +k+rYk+C+kNhAa +GghavDGCgEfmp+ g +gt+++lkCaAC+CHRnFHR+e  
  Aqcoe5G163600.1.p 15 AKCRYKDCMKNHAAIVGGHAVDGCGEFMPA-GPDGTIESLKCAACNCHRNFHRKEII 70
                       589**************************9.999********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-281769IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-191869IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.8E-301869IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.8741968IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.7E-27104178IPR009057Homeodomain-like
SuperFamilySSF466891.28E-16107178IPR009057Homeodomain-like
TIGRFAMsTIGR015653.6E-24118174IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAMASGVRNS GLKAAKCRYK DCMKNHAAIV GGHAVDGCGE FMPAGPDGTI ESLKCAACNC  60
HRNFHRKEII EGGDTFIPLT NHQQQYYYPA PSATVDNHVV QNNGEEQEDM SNPSGSGKRF  120
RTKFTEKQKE KMQELAEKLG WKIQRHDEAE VEQFCKDMCI KRQALKVWIH NHRYILGKKD  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-201161731673ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022740379.12e-62zinc-finger homeodomain protein 2-like
SwissprotQ9SB613e-58ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A2G5EKJ91e-134A0A2G5EKJ9_AQUCA; Uncharacterized protein
STRINGAquca_007_00544.11e-135(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-60homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]