PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G165600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 1421aa    MW: 160945 Da    PI: 7.2038
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G165600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.72e-23236323191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        ++Yn+YA++vGFs+r+s+++++  ++++ kr f+Cs+egk +++++     +++r++trt+Cka++ +k + dg++ + ++++eHnHel+p
  Aqcoe5G165600.1.p 236 DYYNRYARSVGFSIRRSSTTHR-ADRTVSKRIFCCSQEGKYRSHSRG--PPKKQRSHTRTDCKACFAIKIQGDGNYSLVEFVEEHNHELVP 323
                        69***************98886.7888***************99988..999*************************************86 PP
2GATA50.82.3e-1612541290135
               GATA    1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35  
                         C++Cgt++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  Aqcoe5G165600.1.p 1254 CHHCGTSEnsTPAMRRGPDGPRTLCNACGLMWANKGT 1290
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.50988123IPR010399Tify domain
SMARTSM009795.8E-788123IPR010399Tify domain
PfamPF062007.8E-791121IPR010399Tify domain
PfamPF031016.4E-19236323IPR004330FAR1 DNA binding domain
PfamPF105511.2E-26426520IPR018289MULE transposase domain
PROSITE profilePS509669.99706742IPR007527Zinc finger, SWIM-type
PfamPF044349.7E-5716741IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-5717744IPR006564Zinc finger, PMZ-type
PROSITE profilePS5132013.03411081143IPR010399Tify domain
SMARTSM009792.3E-611081143IPR010399Tify domain
PfamPF062001.5E-911131142IPR010399Tify domain
PfamPF062033.0E-1411761218IPR010402CCT domain
PROSITE profilePS5101713.13611761218IPR010402CCT domain
SMARTSM004013.5E-1112481301IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-1412521295IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.28812521307IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-1112521299No hitNo description
CDDcd002028.29E-1512531296No hitNo description
PfamPF003202.8E-1412541290IPR000679Zinc finger, GATA-type
PROSITE patternPS00344012541281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1421 aa     Download sequence    Send to blast
MASTDGDGVV RTAGSENSQP SVVQPAPVIQ IDGNNGRNDV VGVSGSKEKE KNVEEVRLKS  60
KRPRDHNFAS KSRTTGQERP SSDFIVATNS RTSELTLSFE GKVYVFNGVA FEKVQVVLSY  120
LGGNDTAITV PVTDPSFHQN TMGLVNIPQQ LNLSRRIASV IRFREKRKER GFDKRTRYTT  180
QKDISQRMDG KHKGCTLELN DTVQNDGDPP SAMDHLIEMK VPKLGMVFQS DDQAYDYYNR  240
YARSVGFSIR RSSTTHRADR TVSKRIFCCS QEGKYRSHSR GPPKKQRSHT RTDCKACFAI  300
KIQGDGNYSL VEFVEEHNHE LVPPSEVHIL RSHRKSVCND CRNAQFGGSQ DFNQMSSSCA  360
NCLRSSKTGD SLKKWEAQHL LDYCKYMQKE NPYFFYSLKL DENHQISSCF WCDAKSVIDY  420
SFFGDVICFD TRHRISDYDK PYALFVGVNN HGQPILFGCA LLLDETKESL IWAFETFFDA  480
MNKKEPKTIF TDQSPLIIDA VRQVFPNAHH RLCLRHLHQN VANHFSNVVE DCSGFMKDFK  540
RCIYESETEE DFQINWNALL DRYSLAKNEW LEGLYDMREK WAQVFGREHF CAGLTTIQRS  600
EDVDDYLKRY FKRHMPVQDI LSQYEKALSH RRGKERDEDF ISRRTKPNLR TTWPVEVRAA  660
ERYTAKLFAM FQEEYVHTLD VFVDAADEDG TMCIYKVSSF ENTKPRTVTY DSLDKTVKCS  720
CKKFEMMGIL CAHALKILHS KQLPDLPSQY YLHRWTKDAR DGVVVEYHEK SPKVDFFSSF  780
TLLYTDLAYI AVTIAVKGAS TESSCTFTKG LLIRVLEELD HFLKSDSDQS KALEDAVLTL  840
RDRPLKKPKG KGSSTIKGTP EKGKRNGKTQ SRPTGTDGMS DQAPDGVAVA ASRPPMTSDM  900
SNVPIPSIRP WSMSYTEVEE PYRQVEQELL PHSGIDGTQF GLISGGWNVQ HAWEGVVAPQ  960
NEIGYPRDSN LEALSLGPTR QSMPQMPCDK EKTSKQKHFE WLNRANLKPQ AAIAFFSVET  1020
ARPFDDHEDH RRSNRHHHRM QMPVRIDDDD DGGYEDSDDD DEEEDAEDTG GGGDDETMDE  1080
VEEPQPSSRS NQGGGGSGGG GGRSSVSLQP RMSELTLSFE GEVYVFHSVT PEKVQAVLLL  1140
LGGPEIPTGV PSVDIAYHQT NRTATDAPRR SNVSRRVASL VRFREKRKER CFEKKIRYTC  1200
RKEVALRQHR KKGQFVSVKQ NYKEGMSAAS NWDPSQSNFK DDSTPRPEIS LRKCHHCGTS  1260
ENSTPAMRRG PDGPRTLCNA CGLMWANKGT LRDLTKSGRN VSVNQSDQEI KTITMATENS  1320
SADPDEQGSP EDLKPLPSEI GNHSRSVNEQ VLLKHNVLLG LNLDLKVQEI TEDLTKPLPG  1380
RLENLSTNRE EQISLSRNGW QLSWHTFPQA RVEIMKTTLI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026456806.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-123FAR1-related sequence 5