PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G165700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 297aa    MW: 32185.9 Da    PI: 5.4607
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G165700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95.1e-17201237135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  Aqcoe5G165700.1.p 201 CTHCGISSksTPMMRRGPAGPRTLCNACGLMWANKGT 237
                        *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.20866101IPR010399Tify domain
SMARTSM009794.9E-1166101IPR010399Tify domain
PfamPF062001.4E-1269100IPR010399Tify domain
PfamPF062032.4E-16133175IPR010402CCT domain
PROSITE profilePS5101713.364133175IPR010402CCT domain
SMARTSM004011.1E-10195254IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.603195252IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-11197244No hitNo description
Gene3DG3DSA:3.30.50.105.7E-15200242IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.33E-14201243No hitNo description
PROSITE patternPS003440201228IPR000679Zinc finger, GATA-type
PfamPF003201.8E-14201237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MPNSRRISQS YGNLPSNQIN DEDDGAGAES IDNPHLRFED EVMDGVDEDV PSDSGFPGTN  60
SSLALRGENS DQLTLSFHGQ VYVFDSVSAE KVQAVLLLLG GYEIPNAVSE VTITTQNSRG  120
SSDLPCRLSL PQRAASLNRF REKRKDRCFD KKIRYAVRKE VALRMQRKKG QFTSSKPTPE  180
EMANRAVSEN GGPDDSPEIL CTHCGISSKS TPMMRRGPAG PRTLCNACGL MWANKGTLKD  240
LSKAIAAVTQ SPVNQGKQMV EEAEANNCQM RDADQLHTVV PSPNGGNNDL VATAEQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277540.11e-107PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL72e-80GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2G5EKG30.0A0A2G5EKG3_AQUCA; Uncharacterized protein
STRINGAquca_007_00522.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-80ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]