PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G167500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

MYB_related

Protein Properties

Length: 555aa MW: 59052.1 Da PI: 10.0648

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G167500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.2e-09	242	288	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 + rW ++Ed+ l+ av+++G g+W+ I + Rt+ q+ rw Aqcoe5G167500.1.p 242 KRRWQPDEDKELIAAVQRYGEGNWANILKGDFkADRTASQLSQRWAR 288 579************************98433478888888888866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.948	237	294	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-13	240	292	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-11	240	291	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-8	241	292	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-7	242	289	IPR001005	SANT/Myb domain
CDD	cd11660	3.79E-13	243	291	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MAETKKNKKM KKVTISEEDI ALLLQRYSAT TIITLLQEVA QFSNSYEKID WSEVVKKTST 60 GITNAREYQM VWRHLAYRDN LSETVDDVID PLDDDSDLES YLEVFPPVSA KASVEAAAFA 120 KVLLGSALPS ASGPLDLLAV EAPLTINIPT ALDNPQPAST QSKNIMVPVS VQRKDTSSKK 180 HTKGLLPLLL PSVPSTEKLE SERGESAAGA QRRNEQKGSL PTVPTTKGLK RGGSTAGLPS 240 RKRRWQPDED KELIAAVQRY GEGNWANILK GDFKADRTAS QLSQRWARLR KQQANLNLGG 300 HGNPANSQLT AEQLATRRAV SHALDMPMMD KFSGATRTQS SIPLSSAAVP CGREDTSAQQ 360 ASMSTTTLNF NSVKGPAVPL KPLSGSDAMI QAAAVAAGAR IVTPSTAASL LKCPTQTQSS 420 FPLSLAAAPY GREDTSAGCQ TQQAFKGMPT TTLKFNSLKG QAVPLKPLSG SDPMIQATAI 480 VAGARIATPS TAASLLKEAQ FKNVVHRRPG GPCPKVHYIK TGLAPPPPPT PYSSSSPSIP 540 CSGNSQLEHG NATR*

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MAETKKNKKM KKVTISEEDI ALLLQRYSAT TIITLLQEVA QFSNSYEKID WSEVVKKTST  60
GITNAREYQM VWRHLAYRDN LSETVDDVID PLDDDSDLES YLEVFPPVSA KASVEAAAFA  120
KVLLGSALPS ASGPLDLLAV EAPLTINIPT ALDNPQPAST QSKNIMVPVS VQRKDTSSKK  180
HTKGLLPLLL PSVPSTEKLE SERGESAAGA QRRNEQKGSL PTVPTTKGLK RGGSTAGLPS  240
RKRRWQPDED KELIAAVQRY GEGNWANILK GDFKADRTAS QLSQRWARLR KQQANLNLGG  300
HGNPANSQLT AEQLATRRAV SHALDMPMMD KFSGATRTQS SIPLSSAAVP CGREDTSAQQ  360
ASMSTTTLNF NSVKGPAVPL KPLSGSDAMI QAAAVAAGAR IVTPSTAASL LKCPTQTQSS  420
FPLSLAAAPY GREDTSAGCQ TQQAFKGMPT TTLKFNSLKG QAVPLKPLSG SDPMIQATAI  480
VAGARIATPS TAASLLKEAQ FKNVVHRRPG GPCPKVHYIK TGLAPPPPPT PYSSSSPSIP  540
CSGNSQLEHG NATR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5EKC0	0.0	A0A2G5EKC0_AQUCA; Uncharacterized protein
STRING	Aquca_007_00503.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.2	7e-47	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G167500.1.p