PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G171400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 286aa    MW: 33658 Da    PI: 10.8152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G171400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.93.8e-231397899
                       -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        d + + rl++p  f++++ ++  +s +++le++sg +W+v+l  +++s++++l++GW +F++a+ L+ g+f+vF++dg+++f  +v++f++
  Aqcoe5G171400.1.p 13 IDDFDR-RLRIPQAFLQSITKQ--SSEMVILESPSGSRWRVRL--KRTSDGMYLEDGWGKFARAHSLEKGEFLVFRYDGNTKF--TVQIFDS 97
                       556655.6********999855..7789***************..*********************************99888..****997 PP
2B345.61.2e-14191275190
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        ffkv +++++   ++l +p +fa+++   k+e+  +t++ ++gr+W +++  +k  ++ y l +GWk+F ++ +L++g ++vF++++ ++f
  Aqcoe5G171400.1.p 191 FFKVVLRPSYI--HILPIPTRFARRYI--KTEDEIVTIMVPDGRTWHIRC--SKATQGfYQLCEGWKHFKEEINLNVGNICVFEMIRARTF 275
                        55666555554..5699*********5..3456689999***********..666666699***********************9986666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-26398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-25398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.412598IPR003340B3 DNA binding domain
CDDcd100174.13E-22696No hitNo description
SMARTSM010191.0E-18898IPR003340B3 DNA binding domain
PfamPF023621.4E-20997IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-21187278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-21188278IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.378189283IPR003340B3 DNA binding domain
CDDcd100174.53E-16190276No hitNo description
SMARTSM010194.6E-10191283IPR003340B3 DNA binding domain
PfamPF023622.4E-13191275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEAKRRHFFR VMIDDFDRRL RIPQAFLQSI TKQSSEMVIL ESPSGSRWRV RLKRTSDGMY  60
LEDGWGKFAR AHSLEKGEFL VFRYDGNTKF TVQIFDSSTL EKEDAFKVVN SQEEIKCDRG  120
KKRMRPPEVK RKNHLEPWNK SMRLCNPTQI TKRHQEDPLL ERKGPHQSRR SNSLGNTLVK  180
HGPMQAGRNP FFKVVLRPSY IHILPIPTRF ARRYIKTEDE IVTIMVPDGR TWHIRCSKAT  240
QGFYQLCEGW KHFKEEINLN VGNICVFEMI RARTFLLKAP RKHIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1518927846136B3 domain-containing transcription factor VRN1
4i1k_B2e-1518927846136B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EK480.0A0A2G5EK48_AQUCA; Uncharacterized protein
STRINGAquca_007_00469.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-21B3 family protein