PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G171400.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 213aa    MW: 24955.8 Da    PI: 11.0762
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G171400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82e-231297599
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       +   d + + rl++p  f++++ ++  +s +++le++sg +W+v+l  +++s++++l++GW +F++a+ L+ g+f+vF++dg+++f  +v++f+
  Aqcoe5G171400.2.p 12 M--IDDFDR-RLRIPQAFLQSITKQ--SSEMVILESPSGSRWRVRL--KRTSDGMYLEDGWGKFARAHSLEKGEFLVFRYDGNTKF--TVQIFD 96
                       5..566655.6********999855..7789***************..*********************************99888..****99 PP

                       S CS
                 B3 99 k 99
                       +
  Aqcoe5G171400.2.p 97 S 97
                       7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.83E-26398IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-26398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.412598IPR003340B3 DNA binding domain
CDDcd100173.56E-22696No hitNo description
SMARTSM010191.0E-18898IPR003340B3 DNA binding domain
PfamPF023627.5E-21997IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEAKRRHFFR VMIDDFDRRL RIPQAFLQSI TKQSSEMVIL ESPSGSRWRV RLKRTSDGMY  60
LEDGWGKFAR AHSLEKGEFL VFRYDGNTKF TVQIFDSSTL EKEDAFKVVN SQEEIKCDRG  120
KKRMRPPEVK RKNHLEPWNK SMRLCNPTQI TKRHQEDPLL ERKGPHQSRR SNSRKVGNTL  180
VKHGPMQAGR NPFFKVVLRP SYIHILVSSL LT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EK481e-146A0A2G5EK48_AQUCA; Uncharacterized protein
STRINGAquca_007_00469.11e-147(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.14e-22B3 family protein