PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G171900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Dof

Protein Properties

Length: 242aa MW: 25740.5 Da PI: 9.5989

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G171900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.2	7.4e-38	26	84	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++l+cprCds+ntkfCyynny+lsqPr++Ck+CrryWt+GG+lr+vP+Ggg+rkn Aqcoe5G171900.1.p 26 HDQQLQCPRCDSRNTKFCYYNNYNLSQPRHYCKGCRRYWTHGGTLRDVPIGGGSRKNSY 84 7899****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-21	4	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-33	27	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MPSSDYSGER LPAKSTHFTG GGQPEHDQQL QCPRCDSRNT KFCYYNNYNL SQPRHYCKGC 60 RRYWTHGGTL RDVPIGGGSR KNSYKRSRKS PSSSSLSPIP EPVYANPISS RPIPTSVSST 120 ITVRSDHNNV HHHHFNNGVV GGSFTSLLNP QPSPSLLTLN GFGLGLGSSF DEMVTFETGK 180 GVVWPLGFGE NNHSGGVGLI GGGIGNTWQL GIGGGGGGGG NSDFLTWPEV GMSTTARKSV 240 K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002310762.1	2e-50	dof zinc finger protein DOF3.4
Refseq	XP_011039246.1	1e-50	PREDICTED: LOW QUALITY PROTEIN: dof zinc finger protein DOF3.4
TrEMBL	A0A2G5EK42	1e-175	A0A2G5EK42_AQUCA; Uncharacterized protein
STRING	Aquca_007_00464.1	1e-175	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	6e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G171900.1.p