PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G178200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family DBB
Protein Properties Length: 208aa    MW: 23058.2 Da    PI: 6.4948
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G178200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.5e-07433534
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                        C+ +e+  ++lfC  ++  lC+ C ++ H
  Aqcoe5G178200.1.p  4 LCDVCESAAAILFCAADEAALCQACDDKVH 33
                       7*************************9998 PP
2zf-B_box25.43e-085491437
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        +C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Aqcoe5G178200.1.p 54 SCCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91
                       68**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.84147IPR000315B-box-type zinc finger
SMARTSM003361.1E-6147IPR000315B-box-type zinc finger
CDDcd000211.42E-5333No hitNo description
PfamPF006432.4E-6342IPR000315B-box-type zinc finger
PROSITE profilePS501198.7885196IPR000315B-box-type zinc finger
SMARTSM003363.5E-95196IPR000315B-box-type zinc finger
PfamPF006432.8E-65485IPR000315B-box-type zinc finger
CDDcd000212.40E-65684No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCQACDD KVHLCNKLAN RHVRVGLADP SAVSCCDICE  60
NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR IEFPGDKPAH LDNRTLQSMN  120
LVENRREQTH LPEQTLTEKP QNMRVPALVP KRDEHEKMDN MIDLNARPNG IHGGHPSNDQ  180
SKNVMNGYHE ESASIVPRGP PERGPEK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538783.11e-92B-box zinc finger protein 19
RefseqXP_021655083.12e-92B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM54e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2G5EJP61e-153A0A2G5EJP6_AQUCA; Uncharacterized protein
STRINGAquca_007_00360.11e-153(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-75DBB family protein