PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G178600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 213aa    MW: 24483.4 Da    PI: 6.6956
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G178600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.4e-11100124125
                        --S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                        y   +C+++ +tG+C +G  CkFaH
  Aqcoe5G178600.1.p 100 YQPDICKDYKQTGYCGFGLACKFAH 124
                        67789******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.43E-796128IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-699126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.05199127IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-10100128IPR000571Zinc finger, CCCH-type
PfamPF139201.8E-6150193No hitNo description
Gene3DG3DSA:3.30.40.105.6E-13150204IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.46E-10151197No hitNo description
CDDcd001627.26E-5151193No hitNo description
PROSITE profilePS5008910.085152190IPR001841Zinc finger, RING-type
SMARTSM001840.0018152189IPR001841Zinc finger, RING-type
PROSITE patternPS005180167176IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MENSTKLQTS SDQVCNLFPK PFKKNNFRKQ ITQEEEEQDS PSKQHKSDNK IIFSTESKPT  60
PNESTDAVSN TLNSPVESPQ EIRGPVENRN YIRRTYIIDY QPDICKDYKQ TGYCGFGLAC  120
KFAHIREDDH REIGRVEVDV EDEDDNALPS ECSFCHRSFV DPVVTKCKHY FCLHCALKNY  180
STDKRCFVCK ESLSHNFNIA HEIKKKMAAE AK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-3383207180317RING finger protein 113A
5z58_M3e-3383207180317RING finger protein 113A
6ff4_t3e-3383207180317RING finger protein 113A
6ff7_t3e-3383207180317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026393222.12e-41zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX847e-39C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2G5D8B01e-41A0A2G5D8B0_AQUCA; Uncharacterized protein
STRINGAquca_026_00303.12e-42(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.12e-39C3H family protein