PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G179500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 1040aa    MW: 115116 Da    PI: 6.6929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G179500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08681702526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+++++ G+C+ G++C F H+
  Aqcoe5G179500.1.p 681 PCKYYMAEGYCRKGNSCLFVHD 702
                        8********************5 PP
2zf-CCCH18.34.1e-06872893426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        e+C +++r G+C yG +C+++H+
  Aqcoe5G179500.1.p 872 EICVNHLR-GHCLYGVSCHRIHV 893
                        79******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF552772.62E-13164223IPR003169GYF domain
PROSITE profilePS5082913.036169223IPR003169GYF domain
SMARTSM004448.6E-9170225IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.0E-15171224IPR003169GYF domain
PfamPF022134.5E-10172215IPR003169GYF domain
SMARTSM0035613655679IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.535659680IPR000571Zinc finger, CCCH-type
SMARTSM003560.16680703IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-6680702IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019681704IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5681705IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4681702IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.155761788IPR000571Zinc finger, CCCH-type
SMARTSM003563.9762787IPR000571Zinc finger, CCCH-type
SMARTSM0035683791816IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.695817835IPR000571Zinc finger, CCCH-type
SMARTSM003562.6817842IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.958842869IPR000571Zinc finger, CCCH-type
SMARTSM003560.16843868IPR000571Zinc finger, CCCH-type
SMARTSM003560.029869894IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.817873893IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.418894921IPR000571Zinc finger, CCCH-type
SMARTSM003560.063895920IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1040 aa     Download sequence    Send to blast
MLLECAKRLQ LLNSPEERRR RIQEIPEIHA DPSMDPSEKS GDDTNLYDKR QGNHMKQNDT  60
GFNSEGRNTI SPEKGLLLNM AWSRGREFSM NALESSKNMT TKRPSPKGDI AIGFGEKTAG  120
PSGSHESDNH QTNSWEKSVM NSGTVNDQVV VGSGSSSESV LASVVGETDK VWNYQDPSGK  180
TQGPFSMLEL CKWSRTASFA ANLRIWKTMD TQDDSILLTE ALDNTFSRPP KVTAAYENKR  240
VDKLTNGCDF LSGQLTLFST SSPGCSSHMR ESNDCSLVIS QMAHDLPTND GSITSVNDQP  300
SLASVEKGVK ILNPDCKYNH SSLQHSSSPK ADPGEYIITS PGVSRKMTHP SWTDNRHAVS  360
QIDVSDLQTK SGESTTSSKV DAETRSQDIS VSLSPLSNQL TLFSTSSPVS AKPMKGPYSC  420
CDSSMYEPNG CRPLPSQSAH ELLTKDDKIK SSKNDHASSQ RGSSPKADPG DYIMTKPTDS  480
REMPLLSWTG DPEMIQPSLT DDPHAVLQND VSDSQTRSGE CPHTSSEMAG ETRPFDISAI  540
AVVDTQGVVS EPPQPSLDGA LMDIGGDSVI SPAERSKHGS ESNGHTHVQN QQISLQGGAS  600
GALHLGNSGW DARPGNVSKW GSHQENHGNR IFGHQSQSFP DNDSSYRSVS QNGSHQNVPC  660
KYYIRARCRD EHCGYIHQRI PCKYYMAEGY CRKGNSCLFV HDGGRKNEIE MCRNYQRGYG  720
RDSESFPPIR HEETLNQNEI CGNYQRGYHA NGDSFPCIHD EGTKKICTNH QRGYGTEGES  780
CPSIHDEGTL KQNEICRTYQ RGYHTNGDSF PRIHDVGTKQ ICRDHLRGHC SNGESYHRIH  840
VEQKKEICFK NLRGQCQYGE SCYRIHVERI NEICVNHLRG HCLYGVSCHR IHVEDTAEIC  900
RDYQDGHCMN GGSCPLIHAE RTKEYKTTSK LPSPSSNHYK SSFSAIKTFT IQQSKWEVVI  960
SGTNVNSAIH TAEKCDLFNA PCNAPNCKGI MLLYSAHDHG DSSKTELFKF LKCQYDLCPG  1020
FMELQPQSNP VCDTYTYEK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJN30.0A0A2G5EJN3_AQUCA; Uncharacterized protein
STRINGAquca_007_00347.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.14e-21nucleic acid binding;zinc ion binding;DNA binding