PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G180800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25857.1 Da    PI: 9.3932
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G180800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.6e-28959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvtfskRr+gi KKA EL vLCdaev++i+fsstgkl e++s
  Aqcoe5G180800.1.p  9 KRIENTTNRQVTFSKRRTGIVKKARELTVLCDAEVSLIMFSSTGKLSEFIS 59
                       79***********************************************86 PP
2K-box83.45e-2871170199
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                        yq+ sg +l+++++e++q+ l+k k+ +  L+re+R+++Ge+L+ ++s+ eL++Leq+L++s+k +R++K++++ +q+e+ +kk ++lqe++
  Aqcoe5G180800.1.p  71 YQQVSGINLWNSHYEKMQESLKKQKETNMRLRREIRQRIGESLDdDMSFDELRSLEQDLDESVKLVRDRKYHMIATQTETYRKKLRNLQETH 162
                        7899999************************************737********************************************** PP

              K-box  92 kaLrkkle 99 
                        + L +++e
  Aqcoe5G180800.1.p 163 THLVREFE 170
                        ***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.73161IPR002100Transcription factor, MADS-box
SMARTSM004329.9E-41160IPR002100Transcription factor, MADS-box
CDDcd002652.65E-40280No hitNo description
SuperFamilySSF554556.93E-38295IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014868.4E-1882169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.13184175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FSKRRTGIVK KARELTVLCD AEVSLIMFSS TGKLSEFISP  60
STTTKKIYDQ YQQVSGINLW NSHYEKMQES LKKQKETNMR LRREIRQRIG ESLDDDMSFD  120
ELRSLEQDLD ESVKLVRDRK YHMIATQTET YRKKLRNLQE THTHLVREFE TRGEDPYYEG  180
DYESLLGMSS VGAHLVSYRV QPSQHNIQNG EGYGSHNLRL A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-17173171MEF2C
5f28_B2e-17173171MEF2C
5f28_C2e-17173171MEF2C
5f28_D2e-17173171MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4894760.0EF489476.1 Aquilegia vulgaris MADS transcription factor AP3-3 (AP3-3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271509.11e-112PREDICTED: floral homeotic protein DEFICIENS-like isoform X1
SwissprotQ003J22e-98TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2G5EJL61e-162A0A2G5EJL6_AQUCA; Uncharacterized protein
STRINGAquca_007_00336.11e-163(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.19e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]