PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G181200.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

SRS

Protein Properties

Length: 324aa MW: 35261.8 Da PI: 8.485

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G181200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224.8	1.7e-69	90	249	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrel.....kskkqsa 85 ++sCqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpa++rrer qq++ + + aa+++ +++kr+re+ ++++++a Aqcoe5G181200.2.p 90 RSVSCQDCGNQAKKDCVHTRCRTCCKSRGFDCHTHVKSTWVPASRRRERLQQQQLQLQPAAQQQqqrrgMMENTKRPRENllactTNTTTTA 181 5789*******************************************6666655444444444566778889999998665433444444 PP DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++l+s++s e+ +s+P+evss+avfrcvrvs++dd++e++aYqtav+igGhvfkGiLydqG+++ Aqcoe5G181200.2.p 182 TTTSRLPSHTSGLEV-GQSFPAEVSSPAVFRCVRVSAMDDADEQYAYQTAVNIGGHVFKGILYDQGPDR 249 555555666655444.455**********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.2E-67	91	248	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.7E-27	93	135	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.3E-28	200	247	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAGFSLGSGS GGGNQQNQIP QENLYLYKNE EILAYNKELQ LWQQQQQHLQ RQYQQQQGIY 60 GSTSNNTTTM NMMMRSSSSS QGGGSGSGER SVSCQDCGNQ AKKDCVHTRC RTCCKSRGFD 120 CHTHVKSTWV PASRRRERLQ QQQLQLQPAA QQQQQRRGMM ENTKRPRENL LACTTNTTTT 180 ATTTSRLPSH TSGLEVGQSF PAEVSSPAVF RCVRVSAMDD ADEQYAYQTA VNIGGHVFKG 240 ILYDQGPDRD NHPHQHHHYG GGESSSGGGG GGGGAVRDHQ GNLITSSTAA ATPNLFVDPS 300 SAMYPTPLNA FLAGTQFFPH PRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146692	1e-30	AC146692.14 Medicago truncatula clone mth2-7n20, complete sequence.
GenBank	CR962126	1e-30	CR962126.2 Medicago truncatula chromosome 5 clone mth2-143k7, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271515.1	7e-96	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	5e-71	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A2G5EJR8	0.0	A0A2G5EJR8_AQUCA; Uncharacterized protein
STRING	Aquca_007_00333.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-61	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Aqcoe5G181200.2.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]