PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G184200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 753aa MW: 86266.2 Da PI: 8.0955

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G184200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.8	1.7e-23	61	147	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk++GFsvrk ++kk+ +n+ei+++++vC kegk + ++ +++r+r + r gCka++ v+k+++gk++vt l++ HnH+l+ Aqcoe5G184200.1.p 61 EFYNAYAKHAGFSVRKWAEKKN-KNKEIIRKEYVCFKEGKCSIVEEV--EKSRRRGSVREGCKARIAVSKSSNGKFVVTLLVEGHNHPLS 147 6**************99998.7777*********9998766..99999********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-21	61	147	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-31	268	361	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.732	534	570	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0016	545	573	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	6.2E-5	546	564	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MDNIEPENEF FEVNGQGNDM EEVAMGENVD ESSKCDIIPQ VPNDLKPMRG QEFSSLDEVL 60 EFYNAYAKHA GFSVRKWAEK KNKNKEIIRK EYVCFKEGKC SIVEEVEKSR RRGSVREGCK 120 ARIAVSKSSN GKFVVTLLVE GHNHPLSTPR KTHLLRSHRE VSSAHKCLSQ QLSMVNIPTH 180 QQYNFLGVQA GGFENIGCTQ KDLYNYNRDV RKELNGHDAE MFREYLKSEE EKNPSFTYNI 240 DVDDEQRICR AFWADATSRR DYALYGDVVV FDTTYDTNRY KLILAPLMGV NNHGQTIIFG 300 CAFLSDETIP SFIWLLKQFL LAMPGDAPKM IITDQDPAMT NAIAQTLPST FHRYCSWHIL 360 NKFSEKLDAV KYSVYYKEFY YCIWNSKKLV QRSGLQDNKC LRSMFEIRLK WVPAYTSAEM 420 TSSQRAESSH SFFKKYVGED NSMVDFMVQF DTGLQKQRHE ALIADNKDVI EKPKLKMLND 480 ILVQMVDIYT NEIFYKFQSE LLESFNYKFQ LINETDTHRV CRTQRKNVET DKGRQVLYEK 540 DSDYVSCTCN KFESMGIPCR HVLAYLHKYT DFEKLPSHYI LKRWKKSAKS ETVIDCTGIE 600 IVDNKSYFLE RSRLIQCCLG VVNKALTSEE AKKVLIDSLC SAEEKINLLV DSGRKEKKTS 660 GTCGKRTREV VDNVADAELA EQMNCEEVAT YREPNQVRAK GSGKRIKGGK EKALGSSRKE 720 PKGRLCKGCG ERGVGHDVRT CPKVVGASLS QP*

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MDNIEPENEF FEVNGQGNDM EEVAMGENVD ESSKCDIIPQ VPNDLKPMRG QEFSSLDEVL  60
EFYNAYAKHA GFSVRKWAEK KNKNKEIIRK EYVCFKEGKC SIVEEVEKSR RRGSVREGCK  120
ARIAVSKSSN GKFVVTLLVE GHNHPLSTPR KTHLLRSHRE VSSAHKCLSQ QLSMVNIPTH  180
QQYNFLGVQA GGFENIGCTQ KDLYNYNRDV RKELNGHDAE MFREYLKSEE EKNPSFTYNI  240
DVDDEQRICR AFWADATSRR DYALYGDVVV FDTTYDTNRY KLILAPLMGV NNHGQTIIFG  300
CAFLSDETIP SFIWLLKQFL LAMPGDAPKM IITDQDPAMT NAIAQTLPST FHRYCSWHIL  360
NKFSEKLDAV KYSVYYKEFY YCIWNSKKLV QRSGLQDNKC LRSMFEIRLK WVPAYTSAEM  420
TSSQRAESSH SFFKKYVGED NSMVDFMVQF DTGLQKQRHE ALIADNKDVI EKPKLKMLND  480
ILVQMVDIYT NEIFYKFQSE LLESFNYKFQ LINETDTHRV CRTQRKNVET DKGRQVLYEK  540
DSDYVSCTCN KFESMGIPCR HVLAYLHKYT DFEKLPSHYI LKRWKKSAKS ETVIDCTGIE  600
IVDNKSYFLE RSRLIQCCLG VVNKALTSEE AKKVLIDSLC SAEEKINLLV DSGRKEKKTS  660
GTCGKRTREV VDNVADAELA EQMNCEEVAT YREPNQVRAK GSGKRIKGGK EKALGSSRKE  720
PKGRLCKGCG ERGVGHDVRT CPKVVGASLS QP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020272573.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G5CJ92	0.0	A0A2G5CJ92_AQUCA; Uncharacterized protein
STRING	Aquca_050_00023.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-107	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe5G184200.1.p