PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G189000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 83aa    MW: 9302.55 Da    PI: 9.866
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G189000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.2e-101255344
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        WT+   + + +a +++ ++   +W+ +a+ +g g+t++++k ++
  Aqcoe5G189000.1.p 12 TWTPKQNKMFEKALALYDKDtpdRWHNVAKAVG-GKTAEEVKRHY 55
                       6********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.2E-8961IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-51165IPR009057Homeodomain-like
SuperFamilySSF466896.95E-131267IPR009057Homeodomain-like
CDDcd001677.06E-81255No hitNo description
PfamPF002491.3E-71255IPR001005SANT/Myb domain
PROSITE profilePS500906.2261359IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MASSSLRSSI TTWTPKQNKM FEKALALYDK DTPDRWHNVA KAVGGKTAEE VKRHYDLLIE  60
DLKHIESGHV PFPKYRSTTG VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-34480278RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022762310.16e-44protein RADIALIS-like 3
SwissprotQ1A1731e-38RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G5EJ722e-54A0A2G5EJ72_AQUCA; Uncharacterized protein
STRINGAquca_007_00235.13e-55(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-41RAD-like 6