PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G189600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ZF-HD
Protein Properties Length: 397aa    MW: 42330.6 Da    PI: 8.8469
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G189600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1054.7e-33169224359
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                        +vrY+eClkNhAas+Gg++vDGCgEfmp  geegt+++lkCaAC+CHRnFHR+e++ 
  Aqcoe5G189600.1.p 169 SVRYRECLKNHAASIGGQVVDGCGEFMPG-GEEGTVESLKCAACDCHRNFHRKESDG 224
                        79**************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-23169223IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-30170222IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.1E-31171221IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.891172221IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.6E-31320393IPR009057Homeodomain-like
SuperFamilySSF466892.61E-20321392IPR009057Homeodomain-like
TIGRFAMsTIGR015653.3E-27331387IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEFRGQDHKR IVMPSSFVYT PAPIREQNSK VASIFSTTGV GVGVGVGGGG GVGVGGGGER  60
RRDVTAVNGT GILGSSQALD HHHHHHQQSP PPPPIPPSQL QQQHQNQQAA LAPVPAPQQQ  120
LNQARVPDPD PEPDPDPVPV SIAVAGVTTA PIVSGSTPRT PTARNEVSSV RYRECLKNHA  180
ASIGGQVVDG CGEFMPGGEE GTVESLKCAA CDCHRNFHRK ESDGEAQSGA NYYYCYNPNS  240
KANGSRSRIL PPPLPAPPIP QPIQHHKLPI GLPSSPPSGA MMQPIMVTFG GGGGGGGSAA  300
TDSSSEEMNM FHTNAGQGTT PQPSQYGSLS KKRFRTKFSK EQKDKMMEFA EKVGWRMQKQ  360
DEAAVQQFCA EVGVKRQVLK VWMHNNKHSM KKKEEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-263303891675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263641.11e-109PREDICTED: zinc-finger homeodomain protein 5
RefseqXP_019054046.11e-109PREDICTED: zinc-finger homeodomain protein 5
RefseqXP_019054047.11e-109PREDICTED: zinc-finger homeodomain protein 5
RefseqXP_019054048.11e-109PREDICTED: zinc-finger homeodomain protein 5
SwissprotQ9ZPW75e-66ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A2G5EJ440.0A0A2G5EJ44_AQUCA; Uncharacterized protein
STRINGAquca_007_00229.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.15e-61homeobox protein 24