PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G191400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 112aa    MW: 12352.7 Da    PI: 9.2929
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G191400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.9e-081054344
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        WTt   +l+ +a +++  g   +W  +a+ +g g+t +++k ++
  Aqcoe5G191400.1.p 10 TWTTKQNKLFEHALAMYDDGtpdRWYHVAKAVGGGKTVEDIKKHY 54
                       7*****************99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.68662IPR017884SANT domain
SMARTSM007172.5E-5760IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-11965IPR009057Homeodomain-like
CDDcd001672.04E-41054No hitNo description
PfamPF002497.4E-61054IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MASSSVSSST WTTKQNKLFE HALAMYDDGT PDRWYHVAKA VGGGKTVEDI KKHYDFLVED  60
VNNIEAGLIP IPNYQPMVSN NNNNNNKGKG KGKGKGKDIY NGEERSNYSR I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-25175174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423283.14e-33protein RADIALIS-like 3
RefseqXP_006469147.14e-33protein RADIALIS-like 3
SwissprotQ1A1733e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G5EJ801e-71A0A2G5EJ80_AQUCA; Uncharacterized protein
STRINGAquca_007_00215.12e-72(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-30RAD-like 6