PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G197100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 476aa MW: 50216.5 Da PI: 8.4962

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G197100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Aqcoe5G197100.1.p 70 FVCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	15.6	4.6e-05	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H++t+ Aqcoe5G197100.1.p 146 WKCEKCSKKYAVQSDWKAHLKTC 168 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.05E-7	69	92	No hit	No description
Pfam	PF12171	7.5E-5	70	92	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	70	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	111	141	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.8E-5	134	167	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.05E-7	141	166	No hit	No description
SMART	SM00355	79	146	166	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MPVEVDNSSA MTVSTASGEA SASSSGNQVQ PSSTTTETTM KRKRNLPGMP DPDAEVIALS 60 PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RANKEVRKRV YVCPEPSCVH 120 HDPARALGDL TGIKKHFCRK HGEKKWKCEK CSKKYAVQSD WKAHLKTCGT KEYKCDCGTL 180 FSRRDSFVTH RAFCDALAEE SSRAQTSTKS KDEPRRKKHA VSPSPPSPSV VVSMAPLVQD 240 SELPKNVVGS LHYNLPTACL NGSNSTSGTG SSRLSSVFDS RLGGSLQHQT SAFSDLVCAA 300 SLASTPVIEP PLLHLSPCSG FTLFGTTGQD GSQFARPSQP AMSATALLQK AAEMGAAASN 360 PSLLRGLGLS IASSSGHQEN TVWNRDNEGN TASASAGSGL THPSDGSVGL TELMMGPSLL 420 FGPKSATHDF LGLKIGLGGS GTPTGGVSAL ISSMGSGGGD EDLPVAEGDS EVKCD*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MPVEVDNSSA MTVSTASGEA SASSSGNQVQ PSSTTTETTM KRKRNLPGMP DPDAEVIALS  60
PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RANKEVRKRV YVCPEPSCVH  120
HDPARALGDL TGIKKHFCRK HGEKKWKCEK CSKKYAVQSD WKAHLKTCGT KEYKCDCGTL  180
FSRRDSFVTH RAFCDALAEE SSRAQTSTKS KDEPRRKKHA VSPSPPSPSV VVSMAPLVQD  240
SELPKNVVGS LHYNLPTACL NGSNSTSGTG SSRLSSVFDS RLGGSLQHQT SAFSDLVCAA  300
SLASTPVIEP PLLHLSPCSG FTLFGTTGQD GSQFARPSQP AMSATALLQK AAEMGAAASN  360
PSLLRGLGLS IASSSGHQEN TVWNRDNEGN TASASAGSGL THPSDGSVGL TELMMGPSLL  420
FGPKSATHDF LGLKIGLGGS GTPTGGVSAL ISSMGSGGGD EDLPVAEGDS EVKCD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-35	142	203	3	64	Zinc finger protein JACKDAW
5b3h_F	7e-35	142	203	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010244313.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_010244314.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-148	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2G5EIV4	0.0	A0A2G5EIV4_AQUCA; Uncharacterized protein
STRING	Aquca_007_00164.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-126	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Aqcoe5G197100.1.p

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]