PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G198100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NAC

Protein Properties

Length: 197aa MW: 22327.3 Da PI: 4.7117

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G198100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	91.5	1.4e-28	22	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ++Gf F P++ e+v+ yLk+k+ +++++ e+++++d+y+++ ++p + v+++ +e yfF+ ++++y ++++ +t+ gyWk tg+d++ Aqcoe5G198100.1.p 22 AKGFIFAPKEVEIVNGYLKNKAYIHSMPC-EIMQKIDLYRCNADEIPmNeFVYGKPNEAYFFTDNHRRYLMDNQTICQTSGGYWKVTGTDNQ 112 68*************************.89**********95346667888************9999************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +l +++ + kk+Lvfy g+ p+g+ ++ v++eyrl Aqcoe5G198100.1.p 113 ILGTNDDIIAYKKVLVFYWGKFPNGQMSNYVVEEYRL 149 *********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-30	18	176	IPR003441	NAC domain
PROSITE profile	PS51005	30.741	21	176	IPR003441	NAC domain
Pfam	PF02365	5.0E-13	23	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MSDIPPRDFL AVPTNNGNVF LAKGFIFAPK EVEIVNGYLK NKAYIHSMPC EIMQKIDLYR 60 CNADEIPMNE FVYGKPNEAY FFTDNHRRYL MDNQTICQTS GGYWKVTGTD NQILGTNDDI 120 IAYKKVLVFY WGKFPNGQMS NYVVEEYRLN PEVSTTDDIN IRNNIENLVL CKVQLQAPGI 180 IAKESTVEDA NISQSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-20	21	173	17	162	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-20	21	173	17	162	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-20	21	173	17	162	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-20	21	173	17	162	NO APICAL MERISTEM PROTEIN
3swm_A	1e-20	21	173	20	165	NAC domain-containing protein 19
3swm_B	1e-20	21	173	20	165	NAC domain-containing protein 19
3swm_C	1e-20	21	173	20	165	NAC domain-containing protein 19
3swm_D	1e-20	21	173	20	165	NAC domain-containing protein 19
3swp_A	1e-20	21	173	20	165	NAC domain-containing protein 19
3swp_B	1e-20	21	173	20	165	NAC domain-containing protein 19
3swp_C	1e-20	21	173	20	165	NAC domain-containing protein 19
3swp_D	1e-20	21	173	20	165	NAC domain-containing protein 19
4dul_A	1e-20	21	173	17	162	NAC domain-containing protein 19
4dul_B	1e-20	21	173	17	162	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5EIQ4	1e-144	A0A2G5EIQ4_AQUCA; Uncharacterized protein
STRING	Aquca_007_00156.1	1e-145	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46590.1	8e-28	NAC domain containing protein 96

Link Out ? help Back to Top
Phytozome	Aqcoe5G198100.1.p