PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G204100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 182aa    MW: 21014.9 Da    PI: 9.0273
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G204100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.3e-11381003298
                        --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         +   tl+ +sg +W+++l  rk ++++ l +GWk+F++ + +++  f++F+++g+ +f   v++++
  Aqcoe5G204100.1.p  38 FTDYATLKVPSGSVWNIRL--RKVGNKFCLCDGWKDFADHHSICAWHFLTFRYKGSCSF--DVMICD 100
                        44568999***********..*********************************99999..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.93E-1112100No hitNo description
SuperFamilySSF1019361.96E-1337101IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-838100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-1442113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.09543102IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-6122169IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-7123170IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.261125181IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGLYLASGSC FLSSHSWKSI RRDPDPNSFI WRDKKTKFTD YATLKVPSGS VWNIRLRKVG  60
NKFCLCDGWK DFADHHSICA WHFLTFRYKG SCSFDVMICD MSTVEIDYPC KNDDDGYGQS  120
FNKQLPKLFV QTHLPKTLEA ARLIDLEGRT WYLKYNISKQ HAYLNQGWKS RVISTTNSNT  180
D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-17B3 family protein