PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G212700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27401.2 Da    PI: 10.3074
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G212700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.23.3e-161458145
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       k+ien+   ++ fs+Rr+ ++KKA+ELS+LC+a+  v++fs+ +k
  Aqcoe5G212700.1.p 14 KKIENTQALSIAFSRRRKSVFKKASELSTLCGAQTGVVVFSPGDK 58
                       68***************************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-24665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.109666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.24E-23786IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-13828IPR002100Transcription factor, MADS-box
PfamPF003193.5E-191562IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-132843IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-134364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLKKTAGRKK IEIKKIENTQ ALSIAFSRRR KSVFKKASEL STLCGAQTGV VVFSPGDKPF  60
SFGQPSVSAV VDRYLNGNNP PQDLSRFEAY RKARIQKFNE QGGVVQDQFE SAVKRCDALT  120
KIKEQNQKEF RLPSEEEGSS FEELQKELEK MDGMTTNMVN RNEFIRLFRS PLPSSMAPNL  180
RGYVGLSVQD VTSRSNELIG SSSMFTASNR HEHVVPLTNK TSKLISSSMS SVAPDLHGLV  240
GASGSKCG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631SRRRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802340.0JX680234.1 Aquilegia coerulea MADS-box protein AGL73 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EI561e-161A0A2G5EI56_AQUCA; Uncharacterized protein
STRINGAquca_007_00029.11e-162(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-34AGAMOUS-like 62