PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G216100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ZF-HD
Protein Properties Length: 284aa    MW: 31590.6 Da    PI: 8.4116
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G216100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.13.7e-3274130360
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+AC+CHRnFHR+e+e e
  Aqcoe5G216100.1.p  74 IVKYRECLKNHAAAMGGNATDGCGEFMPS-GEEGSLEALKCSACNCHRNFHRKEMEGE 130
                        689*************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.0E-2975127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2575133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-3076127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.62977126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.33E-19212276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-29213276IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-25215271IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDLSSHEGDI PMPITSSYGG GLGHGHGHMI HHDSQSLNHN HNHIIPSSAS QVVLPSNGPI  60
NPSTLEDHMP YKKIVKYREC LKNHAAAMGG NATDGCGEFM PSGEEGSLEA LKCSACNCHR  120
NFHRKEMEGE ASSFEFYHHP HLSKMGRKVI VSHHHHKMLG SDNLGYPSGT LIPSRPAPSH  180
PMLMSYNMSS LPSESDEQDG NGGINVAVRP IHQVKKRFRT KFTQEQKDKM LNFAENSGWR  240
IQKQEDSVVQ QFCQELGIKR RVLKVWMHNN KHNLAKKIDS SPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-242162731875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026446685.11e-135zinc-finger homeodomain protein 4-like
SwissprotO647227e-72ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2G5EHP20.0A0A2G5EHP2_AQUCA; Uncharacterized protein
STRINGAquca_008_00183.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.13e-74homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]