PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G216900.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARF
Protein Properties Length: 686aa    MW: 76480.1 Da    PI: 6.0084
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G216900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.4e-22126226198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++a+++       ++++   ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   
  Aqcoe5G216900.2.p 126 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQNPPW--QELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL-- 213
                        99****************************97444444..48************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        + +++el+v+v+r
  Aqcoe5G216900.2.p 214 RGESGELRVGVRR 226
                        449999*****97 PP
2Auxin_resp106.23.7e-35252334183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha+st++ F+v+Y+Pr+s+seF+v+++k+++a ++k+svGmRfkm+fe+e+++err+sGt++ v +  +  W +S+WrsLk
  Aqcoe5G216900.2.p 252 ASHAISTGTLFSVFYKPRTSQSEFIVSLNKYLEARNHKLSVGMRFKMRFEGEEAPERRFSGTIIRVGENASPWWADSEWRSLK 334
                        789*****************************************************************9999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-43116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-39123241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-20124226No hitNo description
SMARTSM010192.9E-20126228IPR003340B3 DNA binding domain
PfamPF023622.1E-20126226IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166126228IPR003340B3 DNA binding domain
PfamPF065078.6E-34252334IPR010525Auxin response factor
PfamPF023091.3E-5557596IPR033389AUX/IAA domain
PROSITE profilePS5174528.048560653IPR000270PB1 domain
SuperFamilySSF542778.73E-11563637No hitNo description
PfamPF023095.2E-5607651IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MAFAHSSSGG VPDSGSLNDT LYKELWHACA GPLVTVPREG ERVYYFPQGH MEQLEASTHQ  60
ALDQKMPSFN LPSKILCKVV HVQLRAEPET DEVYAQITLL PEPDQSEVTS PDPPLPEPER  120
CMAHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMSQN PPWQELVATD LHGNEWHFRH  180
IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRLLRQ LSNMPSSVIS  240
SHSMHLGVLA TASHAISTGT LFSVFYKPRT SQSEFIVSLN KYLEARNHKL SVGMRFKMRF  300
EGEEAPERRF SGTIIRVGEN ASPWWADSEW RSLKVQWDEP SSIPRPDRVS PWELEPLVCT  360
PSASQPAQRT KRSRPPVLAS TTPDQSIHST LGMWRTPVEP PLNFSYSGLQ RGRELYQSPN  420
PGSPFPTARK PITLGFSGTS PASAVSSNPL YWSNRVESPT ESFKPIINRE SGETRKETGN  480
GYRLFGIQLI ENSNVEETLP VVPVSVSALV EDESIPSLDA GSDRHSQPSN INESDIPAVS  540
SDPEKSCLRS PQEMQSRQIR SCTKVHMQGV AVGRAVDLTL FERYEDLLRK LEGMFDIEGE  600
LCGPTKKWQV VYTDDEDEIM MVGDDPWHEF CSMVRKIFIY TVEEVKRLSP RVKLPTINND  660
IKSGNLDSDI GVGTEDQSSV VGSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.013571355Auxin response factor 1
4ldw_A0.013571355Auxin response factor 1
4ldw_B0.013571355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026435490.10.0auxin response factor 1-like
RefseqXP_026435491.10.0auxin response factor 1-like
RefseqXP_026435492.10.0auxin response factor 1-like
RefseqXP_026435493.10.0auxin response factor 1-like
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A2G5EHV30.0A0A2G5EHV3_AQUCA; Auxin response factor
STRINGAquca_008_00175.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]