PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G238000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 232aa MW: 25732.1 Da PI: 8.3583

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G238000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.5e-09	26	72	2	51
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 r+ h +Er RR+ +++ + L +llP+a + + + ++iL + ++YI Aqcoe5G238000.1.p 26 RERHILAERERRKSMRELMLSLHSLLPQA---NTVRKEQSSILDEIIKYI 72 889************************...99*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.23E-11	16	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.992	24	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-9	26	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-6	26	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.79E-6	26	72	No hit	No description
SMART	SM00353	0.0024	30	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MTVDDWETIS SEGKSSGSSG AQINARERHI LAERERRKSM RELMLSLHSL LPQANTVRKE 60 QSSILDEIIK YIPLVAAQLE SLQKRRDSVS LNRSNNKTAV SPTIQVSDRN SSDDSLHSSD 120 CDIKVAPEPS LSVAIRVRGD RVNVSLIDNK GTSQALLLSA ILDELEAHNL ELVSSTHCRD 180 GSKVLHHSEC KMSDGLERSP TLLKTRLQEL ACKLHTLRKS STLKRNFNQL D*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246746.1	1e-101	PREDICTED: uncharacterized protein LOC104589957
TrEMBL	A0A2G5DE49	1e-164	A0A2G5DE49_AQUCA; Uncharacterized protein
STRING	Aquca_022_00305.1	1e-165	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	3e-08	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G238000.1.p