PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G247900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 449aa    MW: 51471.5 Da    PI: 6.6632
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G247900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.52.3e-25121218186
           trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                        +Wt+ +v++Li+++++++e+  +++           +kk++W++vsk+m+erg+ +sp+qC++k+++lnkryk+++++ +++ +++++++ +
  Aqcoe5G247900.1.p 121 KWTDAMVRLLITVVSYIGEDAATECnsggrrkfailQKKGKWKSVSKVMAERGYYVSPQQCEDKFNDLNKRYKRLTDILGRGtSCKVVENPA 212
                        7*********************98888899999999**********************************************6699999999 PP

           trihelix  81 yfdqle 86 
                        ++d +e
  Aqcoe5G247900.1.p 213 LLDMME 218
                        999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-23119244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEGNLSAGNM IPGASYGVLD LQGSMHVHHQ QHPHALHQHQ QQHPHSQQGS MVHPPMHDVF  60
PLTAGNMHEC EQPMSVIDYN KGDRAKASTS DEDEPSYNEG GVDGHAEAGR GKKGSPWQRM  120
KWTDAMVRLL ITVVSYIGED AATECNSGGR RKFAILQKKG KWKSVSKVMA ERGYYVSPQQ  180
CEDKFNDLNK RYKRLTDILG RGTSCKVVEN PALLDMMEQV SEKNKETVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPPDPQLQ RSLQLALRSR EDEEMRDTRR HQQDDLGEDE QDADTDDHDD  300
EPDENHALHG DNGAMFGFQG GFAKRLKQGQ DHEDLSFGTP SSQDCDKRSY PHPQNTPVDV  360
NQVLPEGSKA AWLQKQCMRS RSLQLEEQKL QIQAQMLELE KQRFKWQRFS RKKDRELDKL  420
RMENERMKLE NERMALDLKR KELETGYS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400412KQRFKWQRFSRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241711.10.0PREDICTED: uncharacterized protein LOC104586241
RefseqXP_019056198.10.0PREDICTED: uncharacterized protein LOC104586241
RefseqXP_019056199.10.0PREDICTED: uncharacterized protein LOC104586241
TrEMBLA0A2G5DCC70.0A0A2G5DCC7_AQUCA; Uncharacterized protein
STRINGAquca_023_00131.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-141sequence-specific DNA binding transcription factors