PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G248000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 536aa    MW: 60371.3 Da    PI: 5.2764
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G248000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.92.1e-2652135186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        rW +qe+laL+++r++m+ ++r++ lk+plWe++s+k++e g++rs+k+Ckek+en+ k+++++ke +  +   + +++++ +qle
  Aqcoe5G248000.1.p  52 RWLRQETLALLKIRSDMDIAFRESPLKGPLWEAISRKLAEAGYNRSAKKCKEKFENIYKYHRRTKEVRAAK--HVGKSYQFSSQLE 135
                        8*******************************************************************986..4555588888876 PP
2trihelix103.22e-32325410187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k ev+aLi++r+++e++++ +  k+ lWeevs++m   g++rs+k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+qlea
  Aqcoe5G248000.1.p 325 RWPKAEVQALITVRSNLENKYQGNVPKGSLWEEVSAAMGNLGCNRSAKRCKEKWENINKYFKKVKESNKKR-PGASKTCPYFNQLEA 410
                        8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.02745109IPR017877Myb-like domain
SMARTSM007170.01749111IPR001005SANT/Myb domain
CDDcd122035.61E-2351116No hitNo description
PfamPF138375.3E-1651136No hitNo description
SMARTSM007170.0016322384IPR001005SANT/Myb domain
PROSITE profilePS500907.027324382IPR017877Myb-like domain
PfamPF138371.2E-22324411No hitNo description
Gene3DG3DSA:1.10.10.601.3E-4324381IPR009057Homeodomain-like
CDDcd122035.53E-24324389No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSVTSSLVGY TGPTTECHEA KEGSVASPVT NEVGDGKEGI GEEGGRNSVA SRWLRQETLA  60
LLKIRSDMDI AFRESPLKGP LWEAISRKLA EAGYNRSAKK CKEKFENIYK YHRRTKEVRA  120
AKHVGKSYQF SSQLEALDSQ SSLPPLPSEN LQIAMVTTAT AGTPTNPTGI SLIDTNPSPL  180
HNINAPDFVS NSSSSQSSLA EYSNKKKRKW NTCFENLIEK LFREQENMQN RLLNALEQLE  240
QRCIAREEAW MAQEMQRIER EHDILIQERR ETHHRNATVV AFLEKMTEQL KKSQLNDSSL  300
DMIEKSANSQ PSNNDQNICQ KSSSRWPKAE VQALITVRSN LENKYQGNVP KGSLWEEVSA  360
AMGNLGCNRS AKRCKEKWEN INKYFKKVKE SNKKRPGASK TCPYFNQLEA LYTEKINNIN  420
NSLNPSYGLN AEDLVMQMTR RSKQDLQLLD QEQLGLSLAV EDFGSEDDFL YYDEADGDRI  480
GEDQGMCLGI ENEFRDDNGQ DEGVGLGNEN EINIPSPLAI VEYVQSQDGN DFLQR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241710.11e-129PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-104TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2G5DC800.0A0A2G5DC80_AQUCA; Uncharacterized protein
STRINGAquca_023_00132.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-99Trihelix family protein