PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G252800.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 318aa    MW: 34644.1 Da    PI: 6.6936
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G252800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20108157255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Aqcoe5G252800.2.p 108 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAESAARAYDEAALRFRG 157
                        7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.607108165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-33108166IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22108166IPR016177DNA-binding domain
PfamPF008471.7E-14108157IPR001471AP2/ERF domain
SMARTSM003805.2E-37108171IPR001471AP2/ERF domain
PRINTSPR003675.8E-12109120IPR001471AP2/ERF domain
CDDcd000182.24E-28116167No hitNo description
PRINTSPR003675.8E-12131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVIAKILVVM LHLQQKRSRE EESGGGQFSE SVLRSFRNYG DFRASQVGGE SSSGVRVKEE  60
VGSIAATTIT TTEVQPAPRD ENTYYAGGGG EGSVAVNVSG GGGESRRRYR GVRQRPWGKW  120
AAEIRDPHKA ARVWLGTFDT AESAARAYDE AALRFRGSRA KLNFPENVRL RPPLPVSPPA  180
TQFSISDTTA TLSPLSQTHQ QFLQSQQQNV HQQQLHSSDI TRDYIQYSQL LQSSGDIQTQ  240
PTTLFEQMLY SSSAPFPPSV ISSSSSSSSN PSLPLFYLDQ QYMGYYPPLD NIDQSDSAGL  300
PAPSWTDSGR DPPSSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-24107168163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4529658e-53HQ452965.1 Pulmonaria officinalis microsatellite Puof-08 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261002.11e-62PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2G5DCC80.0A0A2G5DCC8_AQUCA; Uncharacterized protein
STRINGAquca_023_00168.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.18e-18related to AP2 6