PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G256400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C3H

Protein Properties

Length: 318aa MW: 34719.9 Da PI: 9.1187

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G256400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.9	6.8e-13	179	205	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++te+C+ + +tG C yG++C+FaHg+ Aqcoe5G256400.1.p 179 FRTEICPSWEETGKCVYGSQCQFAHGK 205 58***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.4E-14	174	211	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	178	205	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.328	178	206	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.18E-8	178	209	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-9	179	205	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
METFNSNIRS SSKTTNSLMM RSSLSPSASP YPYNNIKSPP PSSDPFIIND SENIIYDPSL 60 IRYSRSTKPS IDVFGSPTRQ YHHHQNQLLK ASLLSSSPSR GRSTLSSPLA SIENLLTPPS 120 RSPTQPVFGK TSVKAEEDVL VMDGILVKSP SSSGNGSGIR AKSQLNFGSF PGSPNSKLFR 180 TEICPSWEET GKCVYGSQCQ FAHGKEDPRP PRFSTKNKPE GQTYKANMLG GSYTYGTKCR 240 FIQHAAAVNE GSSPQKVEQR HGTIDWLPTD DGIAVCLPSY PTVESPTTEA LGAYINSVLF 300 GSCQKHRLPV FKEFWPD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5C2I0	0.0	A0A2G5C2I0_AQUCA; Uncharacterized protein
STRING	Aquca_114_00016.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	3e-11	C3H family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G256400.1.p