PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G259300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 662aa MW: 76682.5 Da PI: 9.5492

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G259300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.4	9.6e-18	46	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +fY++Y++ vGF ++++++k+ + ++ + ++C +g++++ +k+ ++ ++r++++ ++gCka+l++++++d+kw v k+++ Aqcoe5G259300.1.p 46 EFYKDYGRVVGFGSTIRSTQKRkRGVDKPNIYVLCCEHYGQHKKVDKArdnnsekSVVKKRNTSTIKCGCKAQLRLSRRDDDKWIVVKFDET 137 6*********877766666615566788899******99999999988877888899999********************** PP FAR1 85 HnHela 90 H+H+++ Aqcoe5G259300.1.p 138 HSHNFV 143 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-15	46	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-31	196	289	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence Send to blast
MSRLAVNQRQ KDNDSRTSLS FDLPNKHKSG LYLLAGIFET LDEAKEFYKD YGRVVGFGST 60 IRSTQKRKRG VDKPNIYVLC CEHYGQHKKV DKARDNNSEK SVVKKRNTST IKCGCKAQLR 120 LSRRDDDKWI VVKFDETHSH NFVTPSKRFR MQKIYQWEKL LRFLMVKLLA STKGLAVNFF 180 WVDGRSRMQY QNFGDVLYFD TTYKKNVYSM SFAPFTGVNH HLQSIQFGCA LLSDETEDSF 240 VWAFETFLGA MGGGAPDAII TDQDKAIGGA IGSVFPNARH RFCLWHILKK FPNYLLNIYF 300 KKSKFKKDIK WCIRGTYRIS DFEVTWKKLM EKYKLVENAW FKELYAIREK WIPVYHLNTF 360 YARMNTTGCS EGMNSFYKDF FTYLTTLKDF AYNNEKCLKR IATREKIEDH PSEHKDRIVE 420 GDIFLLKHAA KVYTKNVYIK LKTQWDKAQS EFKLYDSKSL EGGNHIYTYN REWIFMGLPC 480 GHILKVFQGH DIDEIPEFFL VKRWLQGANE YRAKYDGGLV SGHQTSQLLR TTHLTKVASR 540 LAYEATEEDD TYNWMEEKLD ELSKELKERK QTLKSGVTSA LGSNNVEEMI IDDSQILVDD 600 FQAPIDDLCQ TIGLSQPLGD VAQTPLSTQL PTIDSSHVVL KNPRKSKPKG RPTDNHKSSS 660 S*

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence Send to blast

MSRLAVNQRQ KDNDSRTSLS FDLPNKHKSG LYLLAGIFET LDEAKEFYKD YGRVVGFGST  60
IRSTQKRKRG VDKPNIYVLC CEHYGQHKKV DKARDNNSEK SVVKKRNTST IKCGCKAQLR  120
LSRRDDDKWI VVKFDETHSH NFVTPSKRFR MQKIYQWEKL LRFLMVKLLA STKGLAVNFF  180
WVDGRSRMQY QNFGDVLYFD TTYKKNVYSM SFAPFTGVNH HLQSIQFGCA LLSDETEDSF  240
VWAFETFLGA MGGGAPDAII TDQDKAIGGA IGSVFPNARH RFCLWHILKK FPNYLLNIYF  300
KKSKFKKDIK WCIRGTYRIS DFEVTWKKLM EKYKLVENAW FKELYAIREK WIPVYHLNTF  360
YARMNTTGCS EGMNSFYKDF FTYLTTLKDF AYNNEKCLKR IATREKIEDH PSEHKDRIVE  420
GDIFLLKHAA KVYTKNVYIK LKTQWDKAQS EFKLYDSKSL EGGNHIYTYN REWIFMGLPC  480
GHILKVFQGH DIDEIPEFFL VKRWLQGANE YRAKYDGGLV SGHQTSQLLR TTHLTKVASR  540
LAYEATEEDD TYNWMEEKLD ELSKELKERK QTLKSGVTSA LGSNNVEEMI IDDSQILVDD  600
FQAPIDDLCQ TIGLSQPLGD VAQTPLSTQL PTIDSSHVVL KNPRKSKPKG RPTDNHKSSS  660
S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020412171.1	1e-132	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_020417035.1	1e-132	protein FAR1-RELATED SEQUENCE 5 isoform X1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-68	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe5G259300.1.p