PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G260500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 115aa MW: 12840.8 Da PI: 10.1754

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G260500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	24.6	3.3e-08	17	64	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie qvtfsk n i+KK EL L +a v+i+s+ gk + + Aqcoe5G260500.1.p 17 KIEIPKSHQVTFSKSINRIFKKPTELAFLYGAYPFVLILSPGGKPHVF 64 56666778*********************************9997655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-8	8	67	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.054	8	68	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.53E-15	9	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-7	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-10	17	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-7	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-7	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MSSGRKTTRR KKIAIKKIEI PKSHQVTFSK SINRIFKKPT ELAFLYGAYP FVLILSPGGK 60 PHVFVHPGVD VIVNQFLNDG GLVEKQDDAV AYNDYKCAGI DGFARRYNEL NDQI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5CC62	1e-78	A0A2G5CC62_AQUCA; Uncharacterized protein
STRING	Aquca_069_00018.1	2e-79	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	4e-11	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Aqcoe5G260500.1.p