PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G260700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26109.9 Da    PI: 8.3162
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G260700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.51.1e-1525641049
                       HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       qvtfskR ngi+KKA EL  LC+a   v+ifs+ gk + +
  Aqcoe5G260700.1.p 25 QVTFSKRTNGIFKKATELAFLCGAHPFVLIFSPGGKPHVF 64
                       9********************************9997655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.49E-21878IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-22867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.731868IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-121030IPR002100Transcription factor, MADS-box
PfamPF003191.0E-171764IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-123045IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-124566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSSGKKTTGR KKIAIEKIEI PKYLQVTFSK RTNGIFKKAT ELAFLCGAHP FVLIFSPGGK  60
PHVFVHPSVD VIVNQFLNDG ELVEKQDEVV AYNDYKCAGI DGLAHRYNEL NDQVEVVEKQ  120
RCDKKNGNTK SPQYSLITST LEELICSKIE NLKTMFEQAM QNAKNQILVF SRPSSSIYMP  180
NNQPAGNVPA HKVTNFDELI SSSLPNASSN HDGMVNLSIP NSGAIIREAV LKEAIV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802301e-145JX680230.1 Aquilegia coerulea MADS-box protein AGL69 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CB191e-147A0A2G5CB19_AQUCA; Uncharacterized protein
STRINGAquca_069_00021.11e-148(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-19AGAMOUS-like 29