PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G260900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 78aa MW: 8602.32 Da PI: 10.8224

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G260900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47	3.3e-15	24	63	10	49
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 qv fskR ngi+KKA EL LC+a v+ifs+ gk + + Aqcoe5G260900.1.p 24 QVPFSKRTNGIFKKATELAFLCGAHPFVLIFSPGGKPHVF 63 89********************************997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.624	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-20	7	71	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.2E-19	7	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-12	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.6E-17	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-12	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-12	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MTNKKTTGRK KIVIEKIEIP KYLQVPFSKR TNGIFKKATE LAFLCGAHPF VLIFSPGGKP 60 HVFVHPSVDV IVINVQV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX680230	7e-87	JX680230.1 Aquilegia coerulea MADS-box protein AGL69 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021811802.1	3e-20	agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	1e-15	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	K7X7E0	6e-40	K7X7E0_AQUCA; MADS-box protein AGL69
STRING	Aquca_069_00020.1	1e-40	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	3e-15	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Aqcoe5G260900.1.p

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]