PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G261000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 115aa MW: 12798.9 Da PI: 10.195

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G261000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.7	4.1e-15	21	64	6	49
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +vt skR ngi KKA EL LC+a ++ifs+ gkl+ + Aqcoe5G261000.1.p 21 RKSLHVTISKRTNGISKKATELAFLCGAHLFILIFSPGGKLHVF 64 55669*************************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	8.37E-21	8	78	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.395	8	68	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.8E-19	8	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-13	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-16	17	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-13	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-13	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MSSRKKTTGR KKIVIQKIEI RKSLHVTISK RTNGISKKAT ELAFLCGAHL FILIFSPGGK 60 LHVFVHPSVD VIVNRFLNDG GLVEKQDDAV PYNDYKCACI DGLARRYNEL NDQV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011036973.1	2e-22	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A2G5CAZ8	1e-78	A0A2G5CAZ8_AQUCA; Uncharacterized protein
STRING	Aquca_069_00022.1	2e-79	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-21	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Aqcoe5G261000.1.p