PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G264500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 750aa    MW: 86133.6 Da    PI: 9.2633
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G264500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1638.3e-2023112291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    +g++ +r+f Cs+ g re++ ++ ++++++ r  tr++C a l++  ++  + w v  + ++HnH lap
  Aqcoe5G264500.1.p  23 FYNEYAKFKGFSVRKDHKTVV--DGRTRRRRFICSCAGVRERKWTNlHKRRKKARRLTRCNCPAALNIVYDDeLNMWTVRGFMSQHNHVLAP 112
                        9***************97776..999****************9999677788899*************9999899*************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1723112IPR004330FAR1 DNA binding domain
PfamPF105515.2E-36233327IPR018289MULE transposase domain
PROSITE profilePS5096610.806512548IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-6523550IPR006564Zinc finger, PMZ-type
PfamPF044344.5E-6524546IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:4.10.60.105.3E-7677741IPR001878Zinc finger, CCHC-type
SMARTSM003430.69686702IPR001878Zinc finger, CCHC-type
SMARTSM003430.85723739IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MGEISDEDML RARFNTDEDA YFFYNEYAKF KGFSVRKDHK TVVDGRTRRR RFICSCAGVR  60
ERKWTNLHKR RKKARRLTRC NCPAALNIVY DDELNMWTVR GFMSQHNHVL APSGGSHFLR  120
SHRKVSLSNA VLAQNLYALG VSKKLVMDII ISKSGSHAAA GCTARDLYNQ MNRARVERII  180
DGDANLVNSF LEDMNVRDPG FFKKIQVNEK KQLTKLFWSD SQSQEDYKLF GDVLMFDSTY  240
RTNRYDMPLV VFAGVNNHRH TVIYALALMN NETIDSYEWA LKTFLAAMDG IAPKSVITDG  300
DAAIRNAIEN VFPKSKHRLC VWHVVQNAIT NVWIDGFVKG FVEAMFCKGP PDAFEKKLAE  360
LLIEYKTVAE QKWVHNIYEK KEMWAEAYLR EYFFAGCRSN QRCESINSVV RVCVKSGLSL  420
IELVDKLLQK IRHIRYRDFE AEVNTTMTRS AQIPNLTLIG EQAEALYTRA GYEYFFKQLL  480
HEPSYVVNES YEDGEDIIKY LVNRHMHPNA PATVEYNREK DAYNCTCKLF ERVGFLCRHI  540
LAVLKHTHVK ALPKSCILHR WTREAKSSSL DFGTNPTTSC RLGFGLRLKE LEEYSRDLFM  600
WGCESVQRCT MVKGHIAAFD KGEVAQGFDE TPVPKNPLGF EEEPVASTPP QSFPPDNIVD  660
PQRDLGRRGG PRRAKRKMFH QRTSTRCGIC HIVGHSRRTC PSERTGVFAD VPPEVTSSRK  720
APTCSFCNEV GHRCNACPRR RKHQSKIFY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16176RKWTNLHKRRKKARRL
2737741PRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-99FAR1-related sequence 5