PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G264700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 218aa    MW: 24712.2 Da    PI: 8.5955
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G264700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.8e-19150184135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cgt +Tp+WR gp g+ktLCnaCG++y++ +l
  Aqcoe5G264700.1.p 150 CAHCGTEETPQWRMGPMGPKTLCNACGVRYKSGRL 184
                        *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-17144194IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-15147207No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15148182IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.78148180IPR000679Zinc finger, GATA-type
CDDcd002029.86E-17149206No hitNo description
PfamPF003204.6E-17150184IPR000679Zinc finger, GATA-type
PROSITE patternPS003440150175IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGISNTVNIF EPLPIDFTLE DLQDLQDETT KPLSAVSDIS LYDFSPLCIP NDSLDDIGWL  60
LPVPSFTDYS STTLKIDSKQ PLSFVDFPTT PEQDIEFNAK KRSLPKDFHH QDEEHVSLKK  120
KKKLRSKRSS CGRVWTTVNA NVLLPIRRRC AHCGTEETPQ WRMGPMGPKT LCNACGVRYK  180
SGRLVPEYRP ASSPTFNSQV HSNSHKKIVR MRMTRDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199121KKRSLPKDFHHQDEEHVSLKKKK
2117123LKKKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269118.16e-46PREDICTED: GATA transcription factor 7-like
TrEMBLA0A2G5CB661e-161A0A2G5CB66_AQUCA; Uncharacterized protein
STRINGAquca_069_00048.11e-162(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-37GATA transcription factor 1