PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G270100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 349aa MW: 40057.4 Da PI: 5.7921

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G270100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.7	2.1e-09	82	123	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++++r+r + r gCka++ v+k+++gk++vt +++ HnH+l+ Aqcoe5G270100.1.p 82 VEKSRRRGSVREGCKARIAVSKSSNGKFVVTLIVEGHNHPLS 123 57889999********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-7	82	123	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-32	233	326	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MVWDCCYMDN IEPENEFFEV NGQGNDMEEV AMGENVDESS KCDIIPQVPK DLKPMRGQEF 60 SSLDEVLEFY NAYAKHAGFK EVEKSRRRGS VREGCKARIA VSKSSNGKFV VTLIVEGHNH 120 PLSTPRKTHL LRSHREVSSA HKCLSQQLSM VNIPTHQQYN FLGVQAGGFE NIGYVRKELK 180 DHDAEMFREY LKSEEEKNPS FTYNIDVDDE QRICRAFWAD ATSRRDYALY GDVVVFDTTY 240 DTNRYKLILA PLMGVNNHGQ TIIFGCAFLS DETIPSFIWL LKQFLLAMPG DAPKMIITDQ 300 DPAMTNAIAQ TLPSTFHRYC SWHILNKFSE KLDAVKYSVY YKEFYYCI*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MVWDCCYMDN IEPENEFFEV NGQGNDMEEV AMGENVDESS KCDIIPQVPK DLKPMRGQEF  60
SSLDEVLEFY NAYAKHAGFK EVEKSRRRGS VREGCKARIA VSKSSNGKFV VTLIVEGHNH  120
PLSTPRKTHL LRSHREVSSA HKCLSQQLSM VNIPTHQQYN FLGVQAGGFE NIGYVRKELK  180
DHDAEMFREY LKSEEEKNPS FTYNIDVDDE QRICRAFWAD ATSRRDYALY GDVVVFDTTY  240
DTNRYKLILA PLMGVNNHGQ TIIFGCAFLS DETIPSFIWL LKQFLLAMPG DAPKMIITDQ  300
DPAMTNAIAQ TLPSTFHRYC SWHILNKFSE KLDAVKYSVY YKEFYYCI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020272519.1	1e-142	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G5CJ92	0.0	A0A2G5CJ92_AQUCA; Uncharacterized protein
STRING	Aquca_050_00023.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-66	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe5G270100.1.p