PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G271700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

GRAS

Protein Properties

Length: 453aa MW: 51572.8 Da PI: 6.3525

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G271700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	298.6	1.6e-91	76	450	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++lLl A+av++++ e a++ L +l +++s +gd++qR+aayf+ +La r + s y+ + +t+ +ee+ a++ ++++sP+++ Aqcoe5G271700.1.p 76 LIHLLLVSATAVDDNNIESATENLYQLYQHVSLSGDSVQRMAAYFADGLAGRFLTRKSPFYDMIIKDPTP----EEEFLAFTELYKASPYYQ 163 689************************************************999999999888887....678888999******* PP GRAS 93 fshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpf 176 f+h+taNq I ea+e e +++H+iDfdis+G+QWp+L+q+L++++ ++p lRiTg+g+ s eel et+ rL +fA+++ +++f Aqcoe5G271700.1.p 164 FAHFTANQEIIEAFEAEeeqnnRCLHVIDFDISYGFQWPSLIQSLSEKAtmGNPIYLRITGFGK----SLEELVETETRLVNFASTCtNLTF 251 **********98877777889*******************9966677*****....9***********98549* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 ef + l + +L +++E++aVnlvl+lh+l +s+++++ +L v+sl P +v++ve+e++++ sFl rf+e+l+y++a+f Aqcoe5G271700.1.p 252 EFYGM----LRGSKGINLCKQKNETVAVNLVLHLHTLT-NSTQISN----TLISVNSLDPSIVILVEKESSRSLRSFLSRFMESLHYFAAMF 334 **5....4455555887788***********8.5555555....9************************************* PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s.........dgyr 350 dsl+ l++es er +E+ lg+ei+++ ++e e+ ++le+W+ r+e+ GF + +ls++ + qaklll+ + g++ Aqcoe5G271700.1.p 335 DSLDDCLSPESAERLCIEKNHLGKEIKKMMNYDKDE--ENYQRLETWKGRMESKGFVAKKLSSRSVIQAKLLLKIRShTspfttlgggSGFS 424 ***************************99999..*******************************8655331111111114566 PP GRAS 351 ve.eesgslv.lgWkdrpLvsvSaWr 374 + ++g+++ lgW+dr L+++S W+ Aqcoe5G271700.1.p 425 ILeRDEGCALsLGWQDRFLITASTWK 450 54366899889************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.661	50	418	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-89	76	450	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MKDEEDKDEL LDLNLAVKPY SGTDKKKRKM KHAGSTHHHM KPHEGKIYEL LQMRDQMLRL 60 DPMRQGVVED GKGLHLIHLL LVSATAVDDN NIESATENLY QLYQHVSLSG DSVQRMAAYF 120 ADGLAGRFLT RKSPFYDMII KDPTPEEEFL AFTELYKASP YYQFAHFTAN QEIIEAFEAE 180 EEQNNRCLHV IDFDISYGFQ WPSLIQSLSE KATMGNPIYL RITGFGKSLE ELVETETRLV 240 NFASTCTNLT FEFYGMLRGS KGINLCKQKN ETVAVNLVLH LHTLTNSTQI SNTLISVNSL 300 DPSIVILVEK ESSRSLRSFL SRFMESLHYF AAMFDSLDDC LSPESAERLC IEKNHLGKEI 360 KKMMNYDKDE ENYQRLETWK GRMESKGFVA KKLSSRSVIQ AKLLLKIRSH TSPFTTLGGG 420 SGFSILERDE GCALSLGWQD RFLITASTWK CM*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MKDEEDKDEL LDLNLAVKPY SGTDKKKRKM KHAGSTHHHM KPHEGKIYEL LQMRDQMLRL  60
DPMRQGVVED GKGLHLIHLL LVSATAVDDN NIESATENLY QLYQHVSLSG DSVQRMAAYF  120
ADGLAGRFLT RKSPFYDMII KDPTPEEEFL AFTELYKASP YYQFAHFTAN QEIIEAFEAE  180
EEQNNRCLHV IDFDISYGFQ WPSLIQSLSE KATMGNPIYL RITGFGKSLE ELVETETRLV  240
NFASTCTNLT FEFYGMLRGS KGINLCKQKN ETVAVNLVLH LHTLTNSTQI SNTLISVNSL  300
DPSIVILVEK ESSRSLRSFL SRFMESLHYF AAMFDSLDDC LSPESAERLC IEKNHLGKEI  360
KKMMNYDKDE ENYQRLETWK GRMESKGFVA KKLSSRSVIQ AKLLLKIRSH TSPFTTLGGG  420
SGFSILERDE GCALSLGWQD RFLITASTWK CM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-57	84	449	26	377	Protein SCARECROW
5b3h_D	7e-57	84	449	26	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256323.1	0.0	PREDICTED: scarecrow-like protein 23
TrEMBL	A0A2G5DBX6	0.0	A0A2G5DBX6_AQUCA; Uncharacterized protein
STRING	Aquca_023_00050.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	6e-39	RGA-like 2

Link Out ? help Back to Top
Phytozome	Aqcoe5G271700.1.p