PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G276000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 105aa    MW: 12184.5 Da    PI: 7.4123
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G276000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.81.3e-1162103143
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43 
                        +fYn+YAk+vGFsvrk++ +++  ng + +r+f+Cs eg+ ++
  Aqcoe5G276000.1.p  62 NFYNRYAKSVGFSVRKNRLHRN-ANGIVDRRDFCCSWEGHYKK 103
                        6******************999.8999************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-862103IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MENETTKEDT IPEEVGAGFE NSEALEQIKD SNAVDPRDKY RDRGSRIPTI RMLFDTDLDG  60
YNFYNRYAKS VGFSVRKNRL HRNANGIVDR RDFCCSWEGH YKKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224311.22e-13protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A251PRG02e-12A0A251PRG0_PRUPE; Uncharacterized protein
TrEMBLM5WKV82e-12M5WKV8_PRUPE; Uncharacterized protein
STRINGEMJ144324e-13(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.11e-07FAR1-related sequence 12