PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G277800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 204aa    MW: 22959.1 Da    PI: 9.9888
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G277800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF658e-211563149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       kri+++  rqvtfskRr g++KK +ELS+LC+++  v+ifs+ gk y +
  Aqcoe5G277800.1.p 15 KRINDEASRQVTFSKRRSGLFKKFSELSILCGVKTGVVIFSPAGKAYSF 63
                       79*******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.665767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-25775IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-31766IPR002100Transcription factor, MADS-box
CDDcd002651.54E-32873No hitNo description
PRINTSPR004042.9E-20929IPR002100Transcription factor, MADS-box
PfamPF003194.8E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-202944IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-204465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVKKSTKGRQ KIEIKRINDE ASRQVTFSKR RSGLFKKFSE LSILCGVKTG VVIFSPAGKA  60
YSFGHPNIKS IVDGVLTGDT SLNLGEPDVN LGIVDARRAS KVHELNNQYN YHSNRLDIEM  120
GRKEALQVST NTTERQPYEL EMLYDQMKLL RNHVIQQAIK LSMNDSSPTS ILDSNRDRVS  180
HYNPCDAAIF HHGYGSLMGH RFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802320.0JX680232.1 Aquilegia coerulea MADS-box protein aGL71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK7XWN41e-150K7XWN4_AQUCA; MADS-box protein aGL71
STRINGAquca_052_00029.11e-151(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-29AGAMOUS-like 62