PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G280600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26001.6 Da    PI: 4.3233
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G280600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81.1e-16957149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       k+ie+  + ++tfskRr+g++ KA+ELS   + +va+i+fs++g+ly++
  Aqcoe5G280600.1.p  9 KKIEDRQKLNITFSKRRTGLFSKAQELSNRSGDQVAIIVFSTSGRLYTF 57
                       689*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.862161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-21160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-20273IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-14323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-171057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRRSIEIKK IEDRQKLNIT FSKRRTGLFS KAQELSNRSG DQVAIIVFST SGRLYTFGEP  60
GVDFVLDRYI QQGGAGDDVG GTSAAADVPI DDDVGGTFAA ADVPIDDDDD DDEDDIDDND  120
VNSDDDDVIG NGPSLNDLLK ASEKLEAEMK FAGGGTDMGE ILKNKKPVLD GVNGLEAEKK  180
RGGGTRDFLI KKRPYDNNER DHQFNNPKET MSLEEVEKFN KKMKMTADRL RSKDDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802220.0JX680222.1 Aquilegia coerulea MADS-box protein AGL61 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK7XWM61e-121K7XWM6_AQUCA; MADS-box protein AGL61 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-19AGAMOUS-like 62