PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G287400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 250aa    MW: 28919.9 Da    PI: 9.6172
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G287400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.32.6e-151150342
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       i n+s +  t+ kR++g++KK +ELS+LC++e++ +++++
  Aqcoe5G287400.1.p 11 IANDSAQRSTYKKRKQGLMKKINELSTLCGVEACAVVYGP 50
                       8899999*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.558149IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-18161IPR002100Transcription factor, MADS-box
CDDcd002667.96E-32286No hitNo description
PRINTSPR004042.3E-6323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-22395IPR002100Transcription factor, MADS-box
PfamPF003191.2E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MARKKVKLAW IANDSAQRST YKKRKQGLMK KINELSTLCG VEACAVVYGP YDPQVPDVWP  60
SPSDAHRVLT QFKSLPEMER NKKMMNQEAF LKERMAKMRE QIKKQQRENR EFEITQLMNR  120
TLIDGTGQIL QNVETKELKD LAWMIDEKMK RIQKRIDSLR STMESAVQQI NGTGIQTTTE  180
MEAAQRQIWF MNQIMNNPPP QQEQQQQPTD YYGNNPPTQQ EHHHQPIGYY RGVGNDFANG  240
GMPYADNTP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAWIANDSAQRSTYKKRK
21624QRSTYKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802400.0JX680240.1 Aquilegia coerulea MADS-box protein AGL83 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271057.18e-68PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A2G5D2X90.0A0A2G5D2X9_AQUCA; Uncharacterized protein
STRINGAquca_029_00010.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-48AGAMOUS-like 80