PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G293900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

SBP

Protein Properties

Length: 1029aa MW: 114673 Da PI: 7.245

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G293900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.5	5.9e-41	167	244	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCe+hsk++++lv ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Aqcoe5G293900.1.p 167 VCQVDNCDADLSNAKDYHRRHKVCEMHSKSTKALVGNVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 244 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.1E-33	162	229	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.24	165	242	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.02E-38	166	247	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-29	168	241	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.2E-6	796	925	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.12E-5	805	911	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.53E-6	808	908	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1029 aa Download sequence Send to blast
MEGEAQARRR FYSSGGQEFM MRGNRVDLNG EGNKKNKSSE WSLNDWNWDG HLCIATPVQQ 60 DCMATTQLIP FREEIQVAGV LSNTSSSSCS DEIIAVNGNG KGKRELEKRR RRQVDSEDYE 120 LNDESGNLTL NLGGHVYPIP DNVVVNCDGK NGKKTKISNV AASNRAVCQV DNCDADLSNA 180 KDYHRRHKVC EMHSKSTKAL VGNVLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR 240 KTHPETTVNG CSVDDDRSSN YLLISLIRIL SNMHSNNSDQ AKDQDLLSHL VRSLASYKST 300 TDGQNTSTIR QEYKEVVNVE APSGASSEAR LVHETSRHLG STSEINNIVD AQGSHIKTVD 360 QNMNSAPKVS EKQIVVNNFP DGVLQNSPFP TKDGPRLIAH TSDSTVGRPK FNDFDLNTVY 420 SNSEDCEGLE SLQHHVNVGN GSLGIPLWQQ KDSHQSSPPQ TSANSNSLSG QSPSSSGGDA 480 QSRTDRIVFK LFGKDPNHFP DGGLRSQILN WLSHSPTDIE SYIRPGCIIL TVYLRLAEST 540 WQELQDDLSS SLRRLLAVSD DAFWRTGWVY TRVQHHIAFI YNGQIVLDAA LPLTSHNHAR 600 IGSVTPIAVS VSEKVQFLVK GYNLSRHTAR LLCALEGKYL PQEATSDLFD SEHKEIQCLT 660 FPCSVPDITG RGFLEVEDHG LSGDFFPFIV AEQDVCLEIR TLESAVEASE FSDSLISSDK 720 MGMKNQVLNF IHEMGWLLRR SSLRSRISHS DPNSEIFPLT RFRWLMEFSM DHDWCAVVKK 780 LLDVLFDGNV GSGEYPSVEL AVLDMGLLHK AVRRRCRQMV ELLLRYVPKQ PIKKGCDRVL 840 FRPDAVGPGG LTPLHIVASS VGSDNLLDAL TDDHGLVGVK AWKTLRDDAG STPEDYAHLR 900 GHYSYINLVQ KKINKRTDTG HVVLDIPNVL AAYSSDKKQN DKQKSTKLAG FQIGKTNVRP 960 IKMQQSCIAC DQQLACRSTS LSLVYRPAMI SMLAIAAVCV CVSLLFKSSP EVMYVDSFRW 1020 EWLEFGSV*

Sequence ? help Back to Top

Protein Sequence Length: 1029 aa Download sequence Send to blast

MEGEAQARRR FYSSGGQEFM MRGNRVDLNG EGNKKNKSSE WSLNDWNWDG HLCIATPVQQ  60
DCMATTQLIP FREEIQVAGV LSNTSSSSCS DEIIAVNGNG KGKRELEKRR RRQVDSEDYE  120
LNDESGNLTL NLGGHVYPIP DNVVVNCDGK NGKKTKISNV AASNRAVCQV DNCDADLSNA  180
KDYHRRHKVC EMHSKSTKAL VGNVLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR  240
KTHPETTVNG CSVDDDRSSN YLLISLIRIL SNMHSNNSDQ AKDQDLLSHL VRSLASYKST  300
TDGQNTSTIR QEYKEVVNVE APSGASSEAR LVHETSRHLG STSEINNIVD AQGSHIKTVD  360
QNMNSAPKVS EKQIVVNNFP DGVLQNSPFP TKDGPRLIAH TSDSTVGRPK FNDFDLNTVY  420
SNSEDCEGLE SLQHHVNVGN GSLGIPLWQQ KDSHQSSPPQ TSANSNSLSG QSPSSSGGDA  480
QSRTDRIVFK LFGKDPNHFP DGGLRSQILN WLSHSPTDIE SYIRPGCIIL TVYLRLAEST  540
WQELQDDLSS SLRRLLAVSD DAFWRTGWVY TRVQHHIAFI YNGQIVLDAA LPLTSHNHAR  600
IGSVTPIAVS VSEKVQFLVK GYNLSRHTAR LLCALEGKYL PQEATSDLFD SEHKEIQCLT  660
FPCSVPDITG RGFLEVEDHG LSGDFFPFIV AEQDVCLEIR TLESAVEASE FSDSLISSDK  720
MGMKNQVLNF IHEMGWLLRR SSLRSRISHS DPNSEIFPLT RFRWLMEFSM DHDWCAVVKK  780
LLDVLFDGNV GSGEYPSVEL AVLDMGLLHK AVRRRCRQMV ELLLRYVPKQ PIKKGCDRVL  840
FRPDAVGPGG LTPLHIVASS VGSDNLLDAL TDDHGLVGVK AWKTLRDDAG STPEDYAHLR  900
GHYSYINLVQ KKINKRTDTG HVVLDIPNVL AAYSSDKKQN DKQKSTKLAG FQIGKTNVRP  960
IKMQQSCIAC DQQLACRSTS LSLVYRPAMI SMLAIAAVCV CVSLLFKSSP EVMYVDSFRW  1020
EWLEFGSV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	167	241	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270965.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A2G5D354	0.0	A0A2G5D354_AQUCA; Uncharacterized protein
STRING	Aquca_029_00064.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Aqcoe5G293900.1.p