PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G299600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 324aa    MW: 37674.1 Da    PI: 8.3208
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G299600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.13.8e-1564150291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvC.skegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        + neYA+++GFs+++++++k++r+ e +  +  C s+eg+ ++ ++     r++r+e r gC  k+++k++kd+k+e+tk+  eH+Hel+p
  Aqcoe5G299600.1.p  64 YCNEYARTIGFSIKIKRTNKHRRDLEKIVLQTLCySCEGTYTKVNT----PRKRREERRFGCLEKFEIKLNKDEKFELTKFIVEHTHELVP 150
                        5699*************99998887666666666167787777655....5999***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1264150IPR004330FAR1 DNA binding domain
PfamPF105514.8E-15188257IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MWKSRLQYPK DSQEKNPTDF AASNNKNVKD TTSETQSESA DMLDENLFPK IGLIFENLKD  60
AYNYCNEYAR TIGFSIKIKR TNKHRRDLEK IVLQTLCYSC EGTYTKVNTP RKRREERRFG  120
CLEKFEIKLN KDEKFELTKF IVEHTHELVP PTCSYLLRSH RGVKKSQGGI MKKIHSSELQ  180
PDIYYYFCAE AVGVNNNGKT AIFGCGLLEG EPSDAIVWMF ENFLKVMGGK KPSTIFTDQS  240
MAISNTIAYI FPDSHHSFPQ QFKECIYEPE KVEKFEEIWK ALLDDYGLGD NKWLHGLYKL  300
REKMGSSLCP CLFLCWYNYY TKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A200PMW33e-39A0A200PMW3_9MAGN; FAR1 DNA binding domain
STRINGEMJ255105e-35(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.17e-24FAR1-related sequence 12