PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G300500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 462aa    MW: 54295.5 Da    PI: 9.728
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G300500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.62e-131384390
               FAR1  3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                       Yne+A++vGFsvrk k +k+  +g+i +++ +C++               r+r etrtgCka+l+vk++ d++w  +++  eHnH+l+
  Aqcoe5G300500.1.p 13 YNEFARKVGFSVRKGKAYKR-PDGTIRENDPRCKNI--------------RKRRETRTGCKARLMVKEK-DSEWLASNIIFEHNHPLS 84
                       ****************9997.777787777777544..............455679************9.9***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-111384IPR004330FAR1 DNA binding domain
PfamPF105512.1E-31179273IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MKFESKEDAY KKYNEFARKV GFSVRKGKAY KRPDGTIREN DPRCKNIRKR RETRTGCKAR  60
LMVKEKDSEW LASNIIFEHN HPLSTPKKSY MLRSHKNIKN AHEAKIEIDS LNIVGIQPID  120
SYDYMVQQAG SAVLNYFTRK KAENPSFFYE IMVDDENRLT NFFWADTKSI IDYHHFGDVV  180
VFDTTYPTNK YGRPSAPFVG VNHHNQTVIF GGALLIDERT ESFEWLFHTW LRVMSGRKPK  240
TILTNQCGAM AKAIPIVLPE TQHRLCLWHI FQNAAKHLSH VYKIEGFSKK FKRVIYNCET  300
GEFLSRWETF LKKFDLVNNT WLAGLYELRQ KFVKRKYFLT EFVNRYERAL QRRRHTELVS  360
DFEEIKATPK LFVPALMLTQ AAEKYTYAIF TKFENGYKEH LMCKLESCHI DEEGVHGYIV  420
TQEGRRNRIV KFNSSNCVVC SCKKFEFSRI ICCHTVLLEY S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11732RKVGFSVRKGKAYKRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026405193.11e-149protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_026405194.11e-149protein FAR1-RELATED SEQUENCE 9-like isoform X2
RefseqXP_026405195.11e-149protein FAR1-RELATED SEQUENCE 9-like isoform X3
RefseqXP_026405196.11e-149protein FAR1-RELATED SEQUENCE 9-like isoform X4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-87FAR1-related sequence 5