PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G315100.10.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 342aa    MW: 37820.1 Da    PI: 9.4569
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G315100.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.75.8e-12242276135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C  C+t +   WR+gpdg+ +LCnaCG +y+++++
  Aqcoe5G315100.10.p 242 CMECKTDHPRFWRKGPDGKMSLCNACGTRYKRREM 276
                         899****************************9876 PP
2GATA39.95.8e-13302334134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C  C+t ++  WR+gpdg++ LCnaCG +y+k++
  Aqcoe5G315100.10.p 302 CMECKTDHSRFWRKGPDGES-LCNACGQRYKKRK 334
                         999*****************.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF082344.3E-2143110IPR013255Chromosome segregation protein Spc25
SMARTSM004014.4E-5236286IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.29240278IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-10241277IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.24E-8241276No hitNo description
PfamPF003201.8E-9242275IPR000679Zinc finger, GATA-type
SMARTSM004015.5E-6296340IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.655296341IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-10299335No hitNo description
Gene3DG3DSA:3.30.50.104.6E-13301336IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.8E-10302333IPR000679Zinc finger, GATA-type
PROSITE patternPS003440302326IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTTTKDENAI KSRQFLGLAT DKEKIQEIIF FCNRLCGFQI ESTHVFKFIF KNINAKDPNE  60
EYSFTVQLAH ETYTLMNCDP HLDGTKELIQ ELNQTDDVLK FVGIMREKFQ AAAANGSYTV  120
SASAPASSVP VGEGQRDNEN AFQVQAEEVD KIPEKVNHGR KRRSPASGSP NSVPLTPIRP  180
CMKLSCTEVP PGSAGSDFSV RRSARLKTTQ DITGWTDSKG STGGDSSMPV PAAKNDLSLK  240
KCMECKTDHP RFWRKGPDGK MSLCNACGTR YKRREMKKLV VPGGGSSMPG PAAKNDRSVK  300
KCMECKTDHS RFWRKGPDGE SLCNACGQRY KKRKMEKLVS T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EHC00.0A0A2G5EHC0_AQUCA; Uncharacterized protein
STRINGAquca_008_00096.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-07GATA transcription factor 23