PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G320000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 607aa    MW: 70071.9 Da    PI: 9.8117
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G320000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.72.3e-2911101190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fYn+YA+++GFs+rks++++s+ + ei+ rtf+Cs eg r+++ k+ e++ ++ra tr+gCka ++v+k+k +++w+v+++ ++HnH+l+
  Aqcoe5G320000.1.p  11 NFYNHYATNMGFSIRKSTTNRSRITSEIIGRTFCCSLEGVRDPRAKAVEERIKNRADTRIGCKAIMVVRKNKkEETWRVSNVIENHNHALV 101
                        6**********************************************99**********************999***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-2611101IPR004330FAR1 DNA binding domain
PfamPF105511.3E-7236276IPR018289MULE transposase domain
SMARTSM005756.8E-4454481IPR006564Zinc finger, PMZ-type
PfamPF044343.4E-4457475IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MEFNSHEETY NFYNHYATNM GFSIRKSTTN RSRITSEIIG RTFCCSLEGV RDPRAKAVEE  60
RIKNRADTRI GCKAIMVVRK NKKEETWRVS NVIENHNHAL VTPSKRHRLR SQRSVGSTQG  120
HIMDNMLTTG IRTNIMVSFL ASEAGGIQNV GFTKKDANNY LTSKPNGKPS FFYTIQIDSE  180
GRITNFLWAD AKSRIDYHYF GDVVCFDPTY GTNKYNMPFV PIVGINHNYQ TVLFGAMEGK  240
QPKIILTDQE SAIRGAIKQV LPETRHYYCS WYIGRNAMKH LAHEINSQPD FYSDFNKCIY  300
DYETIPAFQS GWDTMIKNYN LEENNWLINL FEKSEKWASV YRCGIFCGGM TTTQRSESIN  360
SYFDKYLKKG MPLWEFMKQY ERAVVDRREE ENNADYDTIY SNQILRFSMK IEKETSNIYT  420
KTIFKKFQEQ LILGLSYRHK KTRTVIFEPS TTNVKRSCQM FNFSGYLCRH ALKIFVMEDV  480
QNLPEQYILK RWTREAKSGS NGVHIASKAS HSDVVFEMAL KGFDDTLKNV EAAIRKLSLN  540
IEPQNGDSGT TSVEVAYPDN ILEPLLDPLV KNGKGRPKTF LNLINRIKKK KTKANKKGLL  600
QKGKSST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245233.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_010245234.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_010245235.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
RefseqXP_010245238.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_010245239.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_010245240.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1U7YXG20.0A0A1U7YXG2_NELNU; protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1U7YZY60.0A0A1U7YZY6_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1U7ZBL80.0A0A1U7ZBL8_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRINGXP_010245233.10.0(Nelumbo nucifera)
STRINGXP_010245238.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-115FAR1-related sequence 5