PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G344500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 247aa    MW: 27870.4 Da    PI: 9.511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G344500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.83.2e-51151391128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelvv+yL++k+ + +l++ ++i+evdi+k+ePwdLp +    e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk++
  Aqcoe5G344500.1.p  15 LPPGFRFHPTDEELVVQYLRRKAFSCPLPA-SIIPEVDICKFEPWDLPGN---LEQERYFFSTREAKYRNGNRPNRATGSGYWKATGLDKKI 102
                        79****************************.89***************54...46799*********************************9 PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++  +++vg+kktLvfy+g+ ++++ktdW+mheyrl
  Aqcoe5G344500.1.p 103 IASkCNQVVGMKKTLVFYRGKPSNASKTDWIMHEYRL 139
                        98767889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5911163IPR003441NAC domain
PROSITE profilePS5100557.22615163IPR003441NAC domain
PfamPF023651.9E-2716139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MENKLNFVRN GVIRLPPGFR FHPTDEELVV QYLRRKAFSC PLPASIIPEV DICKFEPWDL  60
PGNLEQERYF FSTREAKYRN GNRPNRATGS GYWKATGLDK KIIASKCNQV VGMKKTLVFY  120
RGKPSNASKT DWIMHEYRLV DAGNRSTDKS IMEEWVICRI FPKKRSTKNG DDTDKSYSKK  180
EALDLTLGRP SFIDFMKQDK IVSNPTSSSS SSSASSGITE ACSPESYNDD NSSCNSKSSS  240
SCRREP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-531316815170NO APICAL MERISTEM PROTEIN
1ut4_B2e-531316815170NO APICAL MERISTEM PROTEIN
1ut7_A2e-531316815170NO APICAL MERISTEM PROTEIN
1ut7_B2e-531316815170NO APICAL MERISTEM PROTEIN
3swm_A3e-531316818173NAC domain-containing protein 19
3swm_B3e-531316818173NAC domain-containing protein 19
3swm_C3e-531316818173NAC domain-containing protein 19
3swm_D3e-531316818173NAC domain-containing protein 19
3swp_A3e-531316818173NAC domain-containing protein 19
3swp_B3e-531316818173NAC domain-containing protein 19
3swp_C3e-531316818173NAC domain-containing protein 19
3swp_D3e-531316818173NAC domain-containing protein 19
4dul_A2e-531316815170NAC domain-containing protein 19
4dul_B2e-531316815170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026377236.11e-108NAC domain-containing protein 83-like
SwissprotQ9FY931e-84NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2G5E5D50.0A0A2G5E5D5_AQUCA; Uncharacterized protein
STRINGAquca_011_00050.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.19e-85NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]