PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G345900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 706aa    MW: 78526 Da    PI: 6.6254
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G345900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.33.8e-1323407041374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPi 90 
                        lv+lLl+cAeav++++   a+++L +l+ +++p gd+mqR+a++ft AL arla   ++  ++ +p++ ++ +  s ++l+++++ ++++P+
  Aqcoe5G345900.1.p 340 LVHLLLACAEAVAKEEYMSARRYLHHLNRIVTPLGDSMQRVASCFTDALGARLATALTNNRNSSAPKPFTPFHpnSLDTLKIYQIVYQACPY 431
                        68*****************************************************77766666666666655455***************** PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        +kf+h+taNqaI ea+e+eervH++D+di qG QWpa++qaLa R++gpp lRiTgvg      +e+++etg+ L+++A++l+++f f++ v
  Aqcoe5G345900.1.p 432 IKFAHFTANQAIFEAFETEERVHVVDLDILQGYQWPAFMQALAGRRGGPPFLRITGVGY----PQESVRETGRGLTELAHSLHIRFAFHP-V 518
                        ***********************************************************....88*************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a+rledl++++++ + gEalaVn v  lhr++   +sl s    +L ++++  P+vv++veqe++hn++ Fl rfleal+yysa+fdsl+a+
  Aqcoe5G345900.1.p 519 AERLEDLKPHMFHRRIGEALAVNTVNCLHRVP--GGSLGS----LLGMIRDQAPNVVTLVEQESSHNGPYFLGRFLEALHYYSAIFDSLDAT 604
                        *******************************9..777777....************************************************ PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        +p +s er+kvE+ ++++ei+n+vaceg er+erhe+lekWr+ +e  GFk+v+ls +a++q k+ll  ++ dgyr+ e++g+l+lgW+dr+
  Aqcoe5G345900.1.p 605 FPIDSAERAKVEQYIFAPEIRNIVACEGPERVERHERLEKWRKIMEGKGFKEVALSGHAVSQSKMLLGLYPCDGYRLREDRGCLLLGWQDRA 696
                        ******************************************************************************************** PP

               GRAS 367 LvsvSaWr 374
                        ++++SaWr
  Aqcoe5G345900.1.p 697 VIAASAWR 704
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.779314684IPR005202Transcription factor GRAS
PfamPF035141.3E-129340704IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MINSYSGSTG SFKREKSCST LTTISSNDSV LDKSCSAVSK SSSNDPVQSN DISTLLYNNS  60
YPSASHLESL KFEEIFTEAQ SPDYSIWESL FSDQIDFSSD FMIYSPKRTP DLKSPSPKIA  120
YTGNQTSGNY NHNYNYLQGA NQLGCSPLGN SSQIGPYHTL HNGKAQSPSL NKGKAQSPLH  180
KVFNSSKQHE TFVLPGMEGK IDDYQKEILG AYNSTKKTPG FGCSPDNYEM TLLEMLDSPI  240
SSHTTKFGNT LDEALGSGSL QTTQEKDTYQ LNSTATASLP PQHHDKDLYQ LNSVPPSQQH  300
QQNQQQHPHE QLSYSLVTPL SSSVAEQVDF TMEQDSGLQL VHLLLACAEA VAKEEYMSAR  360
RYLHHLNRIV TPLGDSMQRV ASCFTDALGA RLATALTNNR NSSAPKPFTP FHPNSLDTLK  420
IYQIVYQACP YIKFAHFTAN QAIFEAFETE ERVHVVDLDI LQGYQWPAFM QALAGRRGGP  480
PFLRITGVGY PQESVRETGR GLTELAHSLH IRFAFHPVAE RLEDLKPHMF HRRIGEALAV  540
NTVNCLHRVP GGSLGSLLGM IRDQAPNVVT LVEQESSHNG PYFLGRFLEA LHYYSAIFDS  600
LDATFPIDSA ERAKVEQYIF APEIRNIVAC EGPERVERHE RLEKWRKIME GKGFKEVALS  660
GHAVSQSKML LGLYPCDGYR LREDRGCLLL GWQDRAVIAA SAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-943267034377Protein SCARECROW
5b3h_D2e-943267034377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834108.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2G5E5F60.0A0A2G5E5F6_AQUCA; Uncharacterized protein
STRINGAquca_011_00061.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-100RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]